| The Complete Genome Sequence of Escherichia coli K-12 FR Blattner, G Plunkett III, CA Bloch, NT Perna, V Burland, M Riley, ... science 277 (5331), 1453-1462, 1997 | 9896 | 1997 |
| Mauve: multiple alignment of conserved genomic sequence with rearrangements ACE Darling, B Mau, FR Blattner, NT Perna Genome research 14 (7), 1394-1403, 2004 | 4781 | 2004 |
| progressiveMauve: multiple genome alignment with gene gain, loss and rearrangement AE Darling, B Mau, NT Perna PloS one 5 (6), e11147, 2010 | 3991 | 2010 |
| Genome sequence of enterohaemorrhagic Escherichia coli O157:H7 NT Perna, G Plunkett III, V Burland, B Mau, JD Glasner, DJ Rose, ... Nature 409 (6819), 529-533, 2001 | 2518 | 2001 |
| Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli RA Welch, V Burland, G Plunkett III, P Redford, P Roesch, D Rasko, ... Proceedings of the National Academy of Sciences 99 (26), 17020-17024, 2002 | 1825 | 2002 |
| Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes NT Perna, TD Kocher Journal of molecular evolution 41, 353-358, 1995 | 1514 | 1995 |
| Genome Sequence of Yersinia pestis KIM W Deng, V Burland, G Plunkett III, A Boutin, GF Mayhew, P Liss, NT Perna, ... Journal of bacteriology 184 (16), 4601-4611, 2002 | 703 | 2002 |
| Escherichia coli K-12: a cooperatively developed annotation snapshot—2005 M Riley, T Abe, MB Arnaud, MKB Berlyn, FR Blattner, RR Chaudhuri, ... Nucleic acids research 34 (1), 1-9, 2006 | 684 | 2006 |
| Reordering contigs of draft genomes using the Mauve aligner AI Rissman, B Mau, BS Biehl, AE Darling, JD Glasner, NT Perna Bioinformatics 25 (16), 2071-2073, 2009 | 603 | 2009 |
| Host Range and Molecular Phylogenies of the Soft Rot Enterobacterial Genera Pectobacterium and Dickeya B Ma, ME Hibbing, HS Kim, RM Reedy, I Yedidia, J Breuer, J Breuer, ... Phytopathology 97 (9), 1150-1163, 2007 | 577 | 2007 |
| Molecular Evolution of a Pathogenicity Island from Enterohemorrhagic Escherichia coli O157:H7 NT Perna, GF Mayhew, G Pósfai, S Elliott, MS Donnenberg, JB Kaper, ... Infection and immunity 66 (8), 3810-3817, 1998 | 534 | 1998 |
| Complete Genome Sequence and Comparative Genomics of Shigella flexneri Serotype 2a Strain 2457T J Wei, MB Goldberg, V Burland, MM Venkatesan, W Deng, G Fournier, ... Infection and immunity 71 (5), 2775-2786, 2003 | 508 | 2003 |
| The complete DNA sequence and analysis of the large virulence plasmid of Escherichia coli O157:H7 V Burland, Y Shao, NT Perna, G Plunkett, FR Blattner, HJ Sofia Nucleic acids research 26 (18), 4196-4204, 1998 | 467 | 1998 |
| The Role of Secretion Systems and Small Molecules in Soft-Rot Enterobacteriaceae Pathogenicity A Charkowski, C Blanco, G Condemine, D Expert, T Franza, C Hayes, ... Annual review of phytopathology 50, 425-449, 2012 | 260 | 2012 |
| Identification and Characterization of lpfABCC′DE, a Fimbrial Operon of Enterohemorrhagic Escherichia coli O157:H7 AG Torres, JA Giron, NT Perna, V Burland, FR Blattner, F Avelino-Flores, ... Infection and immunity 70 (10), 5416-5427, 2002 | 241 | 2002 |
| ASAP, a systematic annotation package for community analysis of genomes JD Glasner, P Liss, G Plunkett III, A Darling, T Prasad, M Rusch, A Byrnes, ... Nucleic Acids Research 31 (1), 147-151, 2003 | 206 | 2003 |
| Attaching and effacing intestinal histopathology and the locus of enterocyte effacement JB Kaper Escherichia coli and other Shiga toxin-producing E. coli strains, 1998 | 187 | 1998 |
| Analysis of the Lactobacillus casei supragenome and its influence in species evolution and lifestyle adaptation JR Broadbent, EC Neeno-Eckwall, B Stahl, K Tandee, H Cai, W Morovic, ... BMC genomics 13, 1-18, 2012 | 169 | 2012 |
| Directed Evolution of Ionizing Radiation Resistance in Escherichia coli DR Harris, SV Pollock, EA Wood, RJ Goiffon, AJ Klingele, EL Cabot, ... Journal of bacteriology 191 (16), 5240-5252, 2009 | 158 | 2009 |
| Description of the Transcriptomes of Immune Response-Activated Hemocytes from the Mosquito Vectors Aedes aegypti and Armigeres subalbatus LC Bartholomay, WL Cho, TA Rocheleau, JP Boyle, ET Beck, JF Fuchs, ... Infection and immunity 72 (7), 4114-4126, 2004 | 157 | 2004 |
