| Deep learning automates the quantitative analysis of individual cells in live-cell imaging experiments DA Van Valen, T Kudo, KM Lane, DN Macklin, NT Quach, MM DeFelice, ... PLoS computational biology 12 (11), e1005177, 2016 | 585 | 2016 |
| Measuring signaling and RNA-seq in the same cell links gene expression to dynamic patterns of NF-κB activation K Lane, D Van Valen, MM DeFelice, DN Macklin, T Kudo, A Jaimovich, ... Cell systems 4 (4), 458-469. e5, 2017 | 164 | 2017 |
| Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation DN Macklin, TA Ahn-Horst, H Choi, NA Ruggero, J Carrera, JC Mason, ... Science 369 (6502), eaav3751, 2020 | 143 | 2020 |
| NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop MM DeFelice, HR Clark, JJ Hughey, I Maayan, T Kudo, MV Gutschow, ... Science signaling 12 (579), eaau3568, 2019 | 58 | 2019 |
| Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation. Cell Syst. 4, 458-469. e5 K Lane, D Van Valen, MM DeFelice, DN Macklin, T Kudo, A Jaimovich, ... | 7 | 2017 |
| Cross-evaluation of E. coli’s operon structures via a whole-cell model suggests alternative cellular benefits for low-versus high-expressing operons G Sun, MM DeFelice, TE Gillies, TA Ahn-Horst, CJ Andrews, ... Cell Systems 15 (3), 227-245. e7, 2024 | | 2024 |
| Sharing Data from the Human Tumor Atlas Network through Standards, Infrastructure, and Community Engagement I de Bruijn, M Nikolov, C Lau, A Clayton, DL Gibbs, E Mitraka, ... bioRxiv, 2024.06. 25.598921, 2024 | | 2024 |
| NF Research Tools Database: A knowledge base of experimental research tools for neurofibromatosis B Zalmanek, J Goss, M DeFelice, J Hodgson, A Clayton, S Simon, ... Cancer Research 82 (12_Supplement), 1675-1675, 2022 | | 2022 |
| Centralizing neurofibromatosis experimental tool knowledge with the NF Research Tools Database A Clayton, M DeFelice, B Zalmanek, J Hodgson, C Morin, S Simon, ... Database 2022, baac045, 2022 | | 2022 |
| Methods to Visualize, Dissect and Simulate Complex Cellular Behaviors MM DeFelice Stanford University, 2021 | | 2021 |
| Cross-evaluation of curated E. coli transcription unit structures against a whole-cell model G Sun, MM DeFelice, TE Gillies, TA Ahn-Horst, CJ Andrews, JH Morrison, ... | | |
