FlexiDot: highly customizable, ambiguity-aware dotplots for visual sequence analyses KM Seibt, T Schmidt, T Heitkam Bioinformatics, 2018 | 59 | 2018 |
Adding color to a century‐old enigma: multi‐color chromosome identification unravels the autotriploid nature of saffron (Crocus sativus) as a hybrid of wild Crocus … T Schmidt, T Heitkam, S Liedtke, V Schubert, G Menzel New Phytologist, 2019 | 55 | 2019 |
The Ty1-copia families SALIRE and Cotzilla populating the Beta vulgaris genome show remarkable differences in abundance, chromosomal distribution, and age B Weber, T Wenke, U Frömmel, T Schmidt, T Heitkam Chromosome Research 18 (2), 247-263, 2010 | 39 | 2010 |
ECCsplorer: a pipeline to detect extrachromosomal circular DNA (eccDNA) from next-generation sequencing data L Mann, KM Seibt, B Weber, T Heitkam BMC Bioinformatics 23 (1), 1-15, 2022 | 38 | 2022 |
Highly diverse chromoviruses of Beta vulgaris are classified by chromodomains and chromosomal integration B Weber, T Heitkam, D Holtgräwe, B Weisshaar, AE Minoche, JC Dohm, ... Mobile DNA 4, 1-16, 2013 | 37 | 2013 |
BNR – a LINE family from Beta vulgaris– contains a RRM domain in open reading frame 1 and defines a L1 sub‐clade present in diverse plant genomes T Heitkam, T Schmidt The Plant Journal 59 (6), 872-882, 2009 | 35 | 2009 |
Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades T Heitkam, D Holtgräwe, JC Dohm, AE Minoche, H Himmelbauer, ... The Plant Journal 79 (3), 385-397, 2014 | 34 | 2014 |
Next-generation sequencing reveals differentially amplified tandem repeats as a major genome component of Northern Europe's oldest Camellia japonica T Heitkam, S Petrasch, F Zakrzewski, A Kögler, T Wenke, S Wanke, ... Chromosome Research 23 (4), 791-806, 2015 | 32 | 2015 |
A comparative analysis of two conserved motifs in bacterial poly (A) polymerase and CCA-adding enzyme A Just, F Butter, M Trenkmann, T Heitkam, M Mörl, H Betat Nucleic Acids Research 36 (16), 5212-5220, 2008 | 32 | 2008 |
TE-Tracker: systematic identification of transposition events through whole-genome resequencing A Gilly, M Etcheverry, MA Madoui, J Guy, L Quadrana, A Alberti, A Martin, ... BMC Bioinformatics 15 (1), 377, 2014 | 29 | 2014 |
Satellite DNA landscapes after allotetraploidisation of quinoa (Chenopodium quinoa) reveal unique A and B subgenomes T Heitkam, B Weber, I Walter, S Liedtke, C Ost, T Schmidt The Plant Journal, 2020 | 26 | 2020 |
Evolutionary reshuffling in the Errantivirus lineage Elbe within the Beta vulgaris genome C Wollrab, T Heitkam, D Holtgräwe, B Weisshaar, AE Minoche, JC Dohm, ... The Plant Journal 72 (4), 636-651, 2012 | 25 | 2012 |
Broken, silent, and in hiding: tamed endogenous pararetroviruses escape elimination from the genome of sugar beet (Beta vulgaris) N Schmidt, KM Seibt, B Weber, T Schwarzacher, T Schmidt, T Heitkam Annals of Botany, 2021 | 19 | 2021 |
TE Hub: a community-oriented space for sharing and connecting tools, data, resources, and methods for transposable element annotation The TE Hub Consortium, TA Elliott, T Heitkam, R Hubley, H Quesneville, ... Mobile DNA 12 (1), 1-5, 2021 | 17* | 2021 |
Comparative Repeat Profiling of Two Closely Related Conifers (Larix decidua and Larix kaempferi) Reveals High Genome Similarity With Only Few Fast-Evolving … T Heitkam, L Schulte, B Weber, S Liedtke, S Breitenbach, A Kögler, ... Frontiers in Genetics 12, 683668, 2021 | 16 | 2021 |
The diversification and activity of hAT transposons in Musa genomes G Menzel, T Heitkam, KM Seibt, F Nouroz, M Müller-Stoermer, ... Chromosome Research 22 (4), 559-571, 2014 | 15 | 2014 |
Ancient artworks and crocus genetics both support saffron’s origin in early Greece SS Kazemi Shahandashti, L Mann, A El-nagish, D Harpke, Z Nemati, ... Frontiers in Plant Science, 374, 2022 | 14 | 2022 |
Larix species range dynamics in Siberia since the Last Glacial captured from sedimentary ancient DNA L Schulte, S Meucci, KR Stoof-Leichsenring, T Heitkam, N Schmidt, ... Communications Biology 5 (1), 570, 2022 | 13* | 2022 |
Complete pan-plastome sequences enable high resolution phylogenetic classification of sugar beet and closely related crop wild relatives K Sielemann, B Pucker, N Schmidt, P Viehöver, B Weisshaar, T Heitkam, ... BMC genomics 23 (1), 113, 2022 | 13 | 2022 |
The Cassandra retrotransposon landscape in sugar beet (Beta vulgaris) and related Amaranthaceae: recombination and re-shuffling lead to a high structural variability S Maiwald, B Weber, KM Seibt, T Schmidt, T Heitkam Annals of Botany 127 (1), 91-109, 2021 | 11 | 2021 |