| Mapping 3D genome organization relative to nuclear compartments using TSA-Seq as a cytological ruler Y Chen, Y Zhang, Y Wang, L Zhang, EK Brinkman, SA Adam, R Goldman, ... Journal of Cell Biology 217 (11), 4025-4048, 2018 | 338 | 2018 |
| TALEN outperforms Cas9 in editing heterochromatin target sites S Jain, S Shukla, C Yang, M Zhang, Z Fatma, M Lingamaneni, S Abesteh, ... Nature communications 12 (1), 606, 2021 | 82 | 2021 |
| TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes L Zhang, Y Zhang, Y Chen, O Gholamalamdari, Y Wang, J Ma, ... Genome research 31 (2), 251-264, 2021 | 80 | 2021 |
| SPIN reveals genome-wide landscape of nuclear compartmentalization Y Wang, Y Zhang, R Zhang, T van Schaik, L Zhang, T Sasaki, ... Genome biology 22, 1-23, 2021 | 77 | 2021 |
| Predicting CTCF-mediated chromatin loops using CTCF-MP R Zhang, Y Wang, Y Yang, Y Zhang, J Ma Bioinformatics 34 (13), i133-i141, 2018 | 58 | 2018 |
| CRISPR/Cas9-mediated knock-in of an optimized TetO repeat for live cell imaging of endogenous loci I Tasan, G Sustackova, L Zhang, J Kim, M Sivaguru, M HamediRad, ... Nucleic acids research 46 (17), e100-e100, 2018 | 54 | 2018 |
| Nucleome browser: an integrative and multimodal data navigation platform for 4D nucleome X Zhu, Y Zhang, Y Wang, D Tian, AS Belmont, JR Swedlow, J Ma Nature methods 19 (8), 911-913, 2022 | 18 | 2022 |
| Selective clonal persistence of human retroviruses in vivo: radial chromatin organization, integration site, and host transcription A Melamed, TW Fitzgerald, Y Wang, J Ma, E Birney, CRM Bangham Science Advances 8 (17), eabm6210, 2022 | 17 | 2022 |
| Lamin B1 deletion in myeloid neoplasms causes nuclear anomaly and altered hematopoietic stem cell function A Reilly, JP Creamer, S Stewart, MC Stolla, Y Wang, J Du, R Wellington, ... Cell stem cell 29 (4), 577-592. e8, 2022 | 17 | 2022 |
| Compartmentalization with nuclear landmarks yields random, yet precise, genome organization K Kamat, Z Lao, Y Qi, Y Wang, J Ma, B Zhang Biophysical Journal 122 (7), 1376-1389, 2023 | 9 | 2023 |
| Genome compartmentalization with nuclear landmarks: random yet precise K Kamat, Y Qi, Y Wang, J Ma, B Zhang bioRxiv, 2021.11. 12.468401, 2021 | 9 | 2021 |
| Three-dimensional organization of chromatin associated RNAs and their role in chromatin architecture in human cells R Calandrelli, X Wen, JL Charles Richard, Z Luo, TC Nguyen, CJ Chen, ... BioRxiv, 2021.06. 10.447969, 2021 | 9 | 2021 |
| Genome-wide analysis of the interplay between chromatin-associated RNA and 3D genome organization in human cells R Calandrelli, X Wen, JL Charles Richard, Z Luo, TC Nguyen, CJ Chen, ... Nature Communications 14 (1), 6519, 2023 | 7 | 2023 |
| TSA-Seq mapping of nuclear genome organization Y Chen, Y Zhang, Y Wang, L Zhang, EK Brinkman, SA Adam, R Goldman, ... bioRxiv, 307892, 2018 | 7 | 2018 |
| TSA-Seq 2.0 reveals both conserved and variable chromosomal distances to nuclear speckles L Zhang, Y Zhang, Y Chen, O Gholamalamdari, J Ma, AS Belmont bioRxiv, 824433, 2019 | 5 | 2019 |
| Concert: genome-wide prediction of sequence elements that modulate DNA replication timing Y Yang, Y Wang, Y Zhang, J Ma bioRxiv, 2022.04. 21.488684, 2022 | 4 | 2022 |
| Beyond A and B Compartments: how major nuclear locales define nuclear genome organization and function O Gholamalamdari, T van Schaik, Y Wang, P Kumar, L Zhang, Y Zhang, ... bioRxiv, 2024.04. 23.590809, 2024 | | 2024 |
| Loss of Lamin B1 in Myeloid Neoplasms with 5q Deletion Causes Myeloid-Biased Hematopoiesis and Pelger-Huet Nuclear Anomaly A Reilly, JP Creamer, MC Stolla, Y Wang, J Du, R Wellington, S Busch, ... Blood 138, 502, 2021 | | 2021 |
| Long-Term Live Cell Imaging of Endogenous Loci by CRISPR/Cas9-mediated Knock-in of an Optimized TetO Repeat I Tasan, G Sustackova, L Zhang, J Kim, M Sivaguru, M HamediRad, ... 2018 AIChE Annual Meeting, 2018 | | 2018 |
