| RERconverge: an R package for associating evolutionary rates with convergent traits A Kowalczyk, WK Meyer, R Partha, W Mao, NL Clark, M Chikina Bioinformatics 35 (22), 4815-4817, 2019 | 102 | 2019 |
| Pathway-Level Information ExtractoR (PLIER) for gene expression data W Mao, E Zaslavsky, BM Hartmann, SC Sealfon, M Chikina Nature methods 16 (7), 607-610, 2019 | 101 | 2019 |
| Modeling Enhancer-Promoter Interactions with Attention-Based Neural Networks W Mao, D Kostka, M Chikina bioRxiv, 219667, 2017 | 26 | 2017 |
| Phase Conductor on Multi-layered Attentions for Machine Comprehension R Liu, W Wei, W Mao, M Chikina arXiv preprint arXiv:1710.10504, 2017 | 23 | 2017 |
| The chromatin landscape of healthy and injured cell types in the human kidney DL Gisch, M Brennan, BB Lake, J Basta, MS Keller, R Melo Ferreira, ... Nature communications 15 (1), 433, 2024 | 19 | 2024 |
| Distinguishing proteins from arbitrary amino acid sequences SST Yau, WG Mao, M Benson, RL He Scientific Reports 5 (1), 7972, 2015 | 19 | 2015 |
| A crowdsourced analysis to identify ab initio molecular signatures predictive of susceptibility to viral infection S Fourati, A Talla, M Mahmoudian, JG Burkhart, R Klén, R Henao, T Yu, ... Nature communications 9 (1), 4418, 2018 | 17 | 2018 |
| A methylation clock model of mild SARS‐CoV‐2 infection provides insight into immune dysregulation W Mao, CM Miller, VD Nair, Y Ge, MAS Amper, A Cappuccio, MC George, ... Molecular Systems Biology 19 (5), e11361, 2023 | 14 | 2023 |
| Molecular adaptations in response to exercise training are associated with tissue-specific transcriptomic and epigenomic signatures VD Nair, H Pincas, GR Smith, E Zaslavsky, Y Ge, MAS Amper, M Vasoya, ... Cell Genomics, 2024 | 13 | 2024 |
| Virus Database and Online Inquiry System Based on Natural Vectors R Dong, H Zheng, K Tian, SC Yau, W Mao, W Yu, C Yin, C Yu, RL He, ... Evolutionary Bioinformatics 13, 1176934317746667, 2017 | 12 | 2017 |
| Pre-infection antiviral innate immunity contributes to sex differences in SARS-CoV-2 infection N Sauerwald, Z Zhang, I Ramos, VD Nair, A Soares-Schanoski, Y Ge, ... Cell systems 13 (11), 924-931. e4, 2022 | 9 | 2022 |
| Antibody responses to SARS-CoV-2 following an outbreak among marine recruits with asymptomatic or mild infection I Ramos, C Goforth, A Soares-Schanoski, DL Weir, EC Samuels, S Phogat, ... Frontiers in immunology 12, 681586, 2021 | 9 | 2021 |
| Modeling enhancer-promoter interactions with attention-based neural networks. bioRxiv, 219667 W Mao, D Kostka, M Chikina | 7 | 2017 |
| Precision Medicine in Nephrology: An Integrative Framework of Multidimensional Data in the Kidney Precision Medicine Project TM El-Achkar, MT Eadon, M Kretzler, J Himmelfarb, B Lake, K Zhang, ... American Journal of Kidney Diseases 83 (3), 402-410, 2024 | 6 | 2024 |
| Analysis of the human kidney transcriptome and plasma proteome identifies markers of proximal tubule maladaptation to injury Y Wen, E Su, L Xu, S Menez, DG Moledina, W Obeid, PM Palevsky, ... Science Translational Medicine 15 (726), eade7287, 2023 | 6 | 2023 |
| Multi-objective optimization identifies a specific and interpretable COVID-19 host response signature A Cappuccio, DG Chawla, X Chen, AB Rubenstein, WS Cheng, W Mao, ... Cell Systems 13 (12), 989-1001. e8, 2022 | 5 | 2022 |
| An Incentive Mechanism for Crowd Sensing with Colluding Agents S Xu, W Mao, Y Cao, HY Noh, NB Shah arXiv preprint arXiv:1809.05161, 2018 | 4 | 2018 |
| DataRemix: a universal data transformation for optimal inference from gene expression datasets W Mao, J Rahimikollu, R Hausler, M Chikina Bioinformatics 37 (7), 984-991, 2021 | 3 | 2021 |
| Earlier detection of SARS‐CoV‐2 infection by blood RNA signature microfluidics assay A Cappuccio, J Geis, Y Ge, VD Nair, N Ramalingam, W Mao, M Chikina, ... Clinical and translational discovery 2 (3), 2022 | 2 | 2022 |
| Non-negative Independent Factor Analysis disentangles discrete and continuous sources of variation in scRNA-seq data W Mao, MB Pouyan, D Kostka, M Chikina Bioinformatics 38 (10), 2749-2756, 2022 | 2 | 2022 |
Maria ChikinaUniversity of Pittsburgh在 pitt.edu 的电子邮件经过验证
Maria ChikinaUniversity of Pittsburgh在 pitt.edu 的电子邮件经过验证
Stuart SealfonIcahn School of Medicine at Mount Sinai在 mssm.edu 的电子邮件经过验证