| Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial J Čuklina, CH Lee, EG Williams, T Sajic, BC Collins, ... Molecular systems biology 17 (8), e10240, 2021 | 110 | 2021 |
| In silico identification of vaccine targets for 2019-nCoV CH Lee, H Koohy F1000Research 9, 2020 | 99 | 2020 |
| Predicting cross-reactivity and antigen specificity of T cell receptors CH Lee, M Salio, G Napolitani, G Ogg, A Simmons, H Koohy Frontiers in Immunology 11, 565096, 2020 | 60 | 2020 |
| Potential CD8+ T cell cross-reactivity against SARS-CoV-2 conferred by other coronavirus strains CH Lee, MP Pinho, PR Buckley, IB Woodhouse, G Ogg, A Simmons, ... Frontiers in immunology 11, 579480, 2020 | 52 | 2020 |
| MASTL (Greatwall) regulates DNA damage responses by coordinating mitotic entry after checkpoint recovery and APC/C activation PY Wong, HT Ma, H Lee, RYC Poon Scientific reports 6 (1), 22230, 2016 | 42 | 2016 |
| Evaluating performance of existing computational models in predicting CD8+ T cell pathogenic epitopes and cancer neoantigens PR Buckley, CH Lee, R Ma, I Woodhouse, J Woo, VO Tsvetkov, ... Briefings in Bioinformatics 23 (3), bbac141, 2022 | 24 | 2022 |
| HLA-dependent variation in SARS-CoV-2 CD8 + T cell cross-reactivity with human coronaviruses PR Buckley, CH Lee, MP Pinho, RO Babu, J Woo, A Antanaviciute, ... Immunology, 2022 | 21 | 2022 |
| High-resolution profiling of MHC II peptide presentation capacity reveals SARS-CoV-2 CD4 T cell targets and mechanisms of immune escape FJ Obermair, F Renoux, S Heer, CH Lee, N Cereghetti, M Loi, G Maestri, ... Science Advances 8 (17), eabl5394, 2022 | 20 | 2022 |
| To what extent does MHC binding translate to immunogenicity in humans? CH Lee, A Antanaviciute, PR Buckley, A Simmons, H Koohy ImmunoInformatics 3, 2021 | 7 | 2021 |
| CD8+ T cell cross-reactivity against SARS-CoV-2 conferred by other coronavirus strains and influenza virus CH Lee, M Pereira Pinho, P Buckley, I Woodhouse, G Ogg, A Simmons, ... BioRxiv, 2020.05. 20.107292, 2020 | 5 | 2020 |
| Tracking in situ checkpoint inhibitor-bound target T cells in patients with checkpoint-induced colitis T Gupta, A Antanaviciute, CHJ Lee, RO Babu, A Aulicino, Z Christoforidou, ... Cancer Cell 42 (5), 797-814. e15, 2024 | 4 | 2024 |
| A systems approach evaluating the impact of SARS-CoV-2 variant of concern mutations on CD8+ T cell responses PR Buckley, CH Lee, A Antanaviciute, A Simmons, H Koohy Immunotherapy Advances 3 (1), ltad005, 2023 | 4 | 2023 |
| A robust deep learning workflow to predict CD8+ T-cell epitopes CH Lee, J Huh, PR Buckley, M Jang, MP Pinho, RA Fernandes, ... Genome Medicine 15 (1), 70, 2023 | 3 | 2023 |
| Early regional lymph node activation drives influenza vaccine responses in an ancestrally diverse cohort JHY Siu, S Coelho, A Palomeras, S Belij-Rammerstorfer, CH Lee, ... bioRxiv, 2024.10. 28.620725, 2024 | 1 | 2024 |
| A robust deep learning platform to predict CD8+ T-cell epitopes CHJ Lee, J Huh, PR Buckley, MJ Jang, M Pereira Pinho, R Fernandes, ... bioRxiv, 2022.12. 29.522182, 2022 | 1 | 2022 |
| High resolution profiling of MHC-II peptide presentation capacity, by Mammalian Epitope Display, reveals SARS-CoV-2 targets for CD4 T cells and mechanisms of immune-escape FJ Obermair, F Renoux, S Heer, C Lee, N Cereghetti, G Maestri, ... bioRxiv, 2021.03. 02.433522, 2021 | 1 | 2021 |
| In silico identification of vaccine targets for 2019-nCoV (Custom code) CH Lee, H Koohy Zenodo, 2020 | 1 | 2020 |
| 224 SPATIALLY RESOLVED INSIGHTS INTO FISTULATING CROHN'S DISEASE PATHOGENESIS: UNVEILING MOLECULAR HETEROGENEITY C McGregor, Z Yin, E Bridges, T Gupta, A Aulicino, P Siejka-Zielinska, ... Gastroenterology 166 (5), S-47-S-48, 2024 | | 2024 |
| Spatially resolved insights into fistulating Crohn's disease pathogenesis: Unveiling molecular heterogeneity C Mcgregor, Z Yin, E Bridges, T Gupta, A Aulicino, P Siejka-Zielinska, ... JOURNAL OF CROHNS & COLITIS 18, I372-I372, 2024 | | 2024 |
| P097 Spatially resolved insights into fistulating Crohn's disease pathogenesis: Unveiling molecular heterogeneity C Mcgregor, Z Yin, E Bridges, T Gupta, A Aulicino, P Siejka-Zielinska, ... Journal of Crohn's and Colitis 18 (Supplement_1), i376-i376, 2024 | | 2024 |
