SweeD: Likelihood-based detection of selective sweeps in thousands of genomes P Pavlidis, D Živković, A Stamatakis, N Alachiotis Molecular Biology and Evolution, 2013 | 427 | 2013 |
Time and memory efficient likelihood-based tree searches on phylogenomic alignments with missing data A Stamatakis, N Alachiotis Bioinformatics 26 (12), i132-i139, 2010 | 153 | 2010 |
OmegaPlus: a scalable tool for rapid detection of selective sweeps in whole-genome datasets N Alachiotis, A Stamatakis, P Pavlidis Bioinformatics 28 (17), 2274-2275, 2012 | 148 | 2012 |
3D-Stacked Memory-Side Acceleration: Accelerator and System Design Q Guo, N Alachiotis, B Akin, F Sadi, G Xu, TM Low, L Pileggi, JC Hoe, ... 2nd Workshop on Near Data Processing (WONDP) in conjunction with the 47th …, 2014 | 131* | 2014 |
A survey of methods and tools to detect recent and strong positive selection P Pavlidis, N Alachiotis Journal of Biological Research-Thessaloniki 24 (1), 7, 2017 | 127 | 2017 |
RAiSD detects positive selection based on multiple signatures of a selective sweep and SNP vectors N Alachiotis, P Pavlidis Communications Biology 1 (1), 79, 2018 | 125 | 2018 |
Efficient PC-FPGA Communication over Gigabit Ethernet N Alachiotis, SA Berger, A Stamatakis Computer and Information Technology (CIT), 2010 IEEE 10th International …, 2010 | 111 | 2010 |
Archaic Hominin Introgression in Africa Contributes to Functional Salivary MUC7 Genetic Variation D Xu, P Pavlidis, RO Taskent, N Alachiotis, C Flanagan, M DeGiorgio, ... Molecular Biology and Evolution 34 (10), 2704-2715, 2017 | 72 | 2017 |
Exploring FPGAs for accelerating the phylogenetic likelihood function N Alachiotis, E Sotiriades, A Dollas, A Stamatakis 2009 IEEE International Symposium on Parallel & Distributed Processing, 1-8, 2009 | 61 | 2009 |
dReDBox: Materializing a full-stack rack-scale system prototype of a next-generation disaggregated datacenter M Bielski, I Syrigos, K Katrinis, D Syrivelis, A Reale, D Theodoropoulos, ... 2018 Design, Automation & Test in Europe Conference & Exhibition (DATE …, 2018 | 44 | 2018 |
Efficient floating-point logarithm unit for FPGAs N Alachiotis, A Stamatakis 2010 IEEE International Symposium on Parallel & Distributed Processing …, 2010 | 38 | 2010 |
dReDBox: A Disaggregated Architectural Perspective for Data Centers N Alachiotis, A Andronikakis, O Papadakis, D Theodoropoulos, ... Hardware Accelerators in Data Centers, 35-56, 2019 | 32 | 2019 |
A reconfigurable architecture for the phylogenetic likelihood function N Alachiotis, A Stamatakis, E Sotiriades, A Dollas Field Programmable Logic and Applications, 2009. FPL 2009. International …, 2009 | 31 | 2009 |
A generic vectorization scheme and a gpu kernel for the phylogenetic likelihood library F Izquierdo-Carrasco, N Alachiotis, S Berger, T Flouri, SP Pissis, ... 2013 IEEE International Symposium on Parallel & Distributed Processing …, 2013 | 29 | 2013 |
A versatile UDP/IP based PC↔ FPGA communication platform N Alachiotis, SA Berger, A Stamatakis 2012 International Conference on Reconfigurable Computing and FPGAs, 1-6, 2012 | 29 | 2012 |
FPGA acceleration of the phylogenetic parsimony kernel? N Alachiotis, A Stamatakis 2011 21st International Conference on Field Programmable Logic and …, 2011 | 29 | 2011 |
Scalable linkage-disequilibrium-based selective sweep detection: a performance guide N Alachiotis, P Pavlidis GigaScience 5 (1), s13742-016-0114-9, 2016 | 28 | 2016 |
Detecting Positive Selection in Populations Using Genetic Data A Koropoulis, N Alachiotis, P Pavlidis Statistical Population Genomics, 87-123, 2020 | 27 | 2020 |
A Dynamic Reconfigurable Architecture for Hybrid Spiking and Convolutional FPGA-Based Neural Network Designs H Irmak, F Corradi, P Detterer, N Alachiotis, D Ziener Journal of Low Power Electronics and Applications 11 (3), 32, 2021 | 24 | 2021 |
Accelerating phylogeny-aware short DNA read alignment with FPGAs N Alachiotis, SA Berger, A Stamatakis 2011 IEEE 19th Annual International Symposium on Field-Programmable Custom …, 2011 | 24 | 2011 |