| Deep sequencing of the Medicago truncatula root transcriptome reveals a massive and early interaction between nodulation factor and ethylene signals E Larrainzar, BK Riely, SC Kim, N Carrasquilla-Garcia, HJ Yu, HJ Hwang, ... Plant Physiology 169 (1), 233-265, 2015 | 156 | 2015 |
| A predictive modeling approach for cell line-specific long-range regulatory interactions S Roy, AF Siahpirani, D Chasman, S Knaack, F Ay, R Stewart, M Wilson, ... Nucleic Acids Research, 2015 | 144 | 2015 |
| Pathway connectivity and signaling coordination in the yeast stress‐activated signaling network D Chasman, YH Ho, DB Berry, CM Nemec, ME MacGilvray, J Hose, ... Molecular systems biology 10 (11), 759, 2014 | 105 | 2014 |
| Network-based approaches for analysis of complex biological systems D Chasman, AF Siahpirani, S Roy Current Opinion in Biotechnology 39, 157-166, 2016 | 93 | 2016 |
| Physiological responses and gene co-expression network of mycorrhizal roots under K+ deprivation K Garcia, D Chasman, S Roy, JM Ané Plant physiology 173 (3), 1811-1823, 2017 | 88 | 2017 |
| Childhood Asthma Incidence, Early and Persistent Wheeze, and Neighborhood Socioeconomic Factors in the ECHO/CREW Consortium A Zanobetti, PH Ryan, B Coull, C Brokamp, S Datta, J Blossom, N Lothrop, ... JAMA pediatrics 176 (8), 759-767, 2022 | 82 | 2022 |
| In silico prediction of high-resolution Hi-C interaction matrices S Zhang, D Chasman, S Knaack, S Roy Nature communications 10 (1), 5449, 2019 | 71 | 2019 |
| Identification of FMR1-regulated molecular networks in human neurodevelopment M Li, J Shin, RD Risgaard, MJ Parries, J Wang, D Chasman, S Liu, S Roy, ... Genome Research 30 (3), 361-374, 2020 | 68 | 2020 |
| Expression quantitative trait locus fine mapping of the 17q12–21 asthma locus in African American children: a genetic association and gene expression study C Ober, CG McKennan, KM Magnaye, MC Altman, C Washington, ... The Lancet Respiratory Medicine 8 (5), 482-492, 2020 | 62 | 2020 |
| Integrative Genomic Analysis Predicts Causative Cis-Regulatory Mechanisms of the Breast Cancer–Associated Genetic Variant rs4415084Regulatory Genomics of GWAS SNPs Y Zhang, M Manjunath, S Zhang, D Chasman, S Roy, JS Song Cancer research 78 (7), 1579-1591, 2018 | 41 | 2018 |
| Integrating transcriptomic and proteomic data using predictive regulatory network models of host response to pathogens D Chasman, KB Walters, TJS Lopes, AJ Eisfeld, Y Kawaoka, S Roy PLoS computational biology 12 (7), e1005013, 2016 | 27 | 2016 |
| Transcriptional and Functional Programming of Decidual Innate Lymphoid Cells J Vazquez, DA Chasman, GE Lopez, CT Tyler, IM Ong, AK Stanic Frontiers in Immunology 10, 3065, 2020 | 25 | 2020 |
| Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response ME MacGilvray, E Shishkova, D Chasman, M Place, A Gitter, JJ Coon, ... PLoS computational biology 13 (5), e1006088, 2018 | 25 | 2018 |
| Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development D Chasman, N Iyer, AF Siahpirani, ME Silva, E Lippmann, B McIntosh, ... Cell systems 9 (2), 167-186. e12, 2019 | 23 | 2019 |
| Inference of cell type specific regulatory networks on mammalian lineages D Chasman, S Roy Current opinion in systems biology 2, 130-139, 2017 | 23 | 2017 |
| The inconvenience of data of convenience: computational research beyond post-mortem analyses CA Azencott, T Aittokallio, S Roy, T Norman, S Friend, G Stolovitzky, ... Nature methods 14 (10), 937-938, 2017 | 13 | 2017 |
| Multi-task consensus clustering of genome-wide transcriptomes from related biological conditions Z Niu, D Chasman, AJ Eisfeld, Y Kawaoka, S Roy Bioinformatics 32 (10), 1509-1517, 2016 | 10 | 2016 |
| Integrative approaches for inference of genome-scale gene regulatory networks AF Siahpirani, D Chasman, S Roy Gene Regulatory Networks: Methods and Protocols, 161-194, 2019 | 9 | 2019 |
| Deciphering the role of 3D genome organization in breast cancer susceptibility B Baur, DI Lee, J Haag, D Chasman, M Gould, S Roy Frontiers in Genetics 12, 2804, 2022 | 8 | 2022 |
| Inferring Host Gene Subnetworks Involved in Viral Replication D Chasman, B Gancarz, L Hao, M Ferris, P Ahlquist, M Craven PLoS computational biology 10 (5), e1003626, 2014 | 8 | 2014 |
Sushmita RoyProfessor of Biostatistics and medical informatics, University of Wisconsin-Madison在 biostat.wisc.edu 的电子邮件经过验证
