| Big data in IBD: big progress for clinical practice NSS Tabib, M Madgwick, P Sudhakar, B Verstockt, T Korcsmaros, ... Gut 69 (8), 1520-1532, 2020 | 147 | 2020 |
| Extracellular vesicles produced by the human commensal gut bacterium Bacteroides thetaiotaomicron affect host immune pathways in a cell‐type specific manner … L Gul, D Modos, S Fonseca, M Madgwick, JP Thomas, P Sudhakar, ... Journal of Extracellular Vesicles 11 (1), e12189, 2022 | 54 | 2022 |
| Targeted interplay between bacterial pathogens and host autophagy P Sudhakar, AC Jacomin, I Hautefort, S Samavedam, K Fatemian, E Ari, ... Autophagy 15 (9), 1620-1633, 2019 | 46 | 2019 |
| A genome-wide study of two-component signal transduction systems in eight newly sequenced mutans streptococci strains L Song, P Sudhakar, W Wang, G Conrads, A Brock, J Sun, ... BMC genomics 13, 1-20, 2012 | 44 | 2012 |
| Regulatory network analysis of Paneth cell and goblet cell enriched gut organoids using transcriptomics approaches A Treveil, P Sudhakar, ZJ Matthews, T Wrzesiński, EJ Jones, J Brooks, ... Molecular Omics 16 (1), 39-58, 2020 | 41 | 2020 |
| MDH1 and MPP7 regulate autophagy in pancreatic ductal adenocarcinoma M New, T Van Acker, J Sakamaki, M Jiang, RE Saunders, J Long, ... Cancer research 79 (8), 1884-1898, 2019 | 34 | 2019 |
| ULK1 and ULK2 are less redundant than previously thought: computational analysis uncovers distinct regulation and functions of these autophagy induction proteins A Demeter, MC Romero-Mulero, L Csabai, M Ölbei, P Sudhakar, ... Scientific reports 10 (1), 10940, 2020 | 33 | 2020 |
| Understanding the molecular drivers of disease heterogeneity in Crohn’s disease using multi-omic data integration and network analysis P Sudhakar, B Verstockt, J Cremer, S Verstockt, J Sabino, M Ferrante, ... Inflammatory Bowel Diseases 27 (6), 870-886, 2021 | 30 | 2021 |
| SalmoNet, an integrated network of ten Salmonella enterica strains reveals common and distinct pathways to host adaptation A Métris, P Sudhakar, D Fazekas, A Demeter, E Ari, M Olbei, P Branchu, ... NPJ systems biology and applications 3 (1), 31, 2017 | 29 | 2017 |
| MicrobioLink: an integrated computational pipeline to infer functional effects of microbiome–host interactions T Andrighetti, B Bohar, N Lemke, P Sudhakar, T Korcsmaros Cells 9 (5), 1278, 2020 | 26 | 2020 |
| Evolution of regulatory networks associated with traits under selection in cichlids TK Mehta, C Koch, W Nash, SA Knaack, P Sudhakar, M Olbei, ... Genome biology 22, 1-28, 2021 | 25 | 2021 |
| Integrative analysis of Paneth cell proteomic and transcriptomic data from intestinal organoids reveals functional processes dependent on autophagy EJ Jones, ZJ Matthews, L Gul, P Sudhakar, A Treveil, D Divekar, J Buck, ... Disease models & mechanisms 12 (3), dmm037069, 2019 | 24 | 2019 |
| SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks L Csabai, D Fazekas, T Kadlecsik, M Szalay-Bekő, B Bohár, M Madgwick, ... Nucleic acids research 50 (D1), D701-D709, 2022 | 23 | 2022 |
| What we learned from big data for autophagy research AC Jacomin, L Gul, P Sudhakar, T Korcsmaros, IP Nezis Frontiers in cell and developmental biology 6, 92, 2018 | 22 | 2018 |
| Construction and verification of the transcriptional regulatory response network of Streptococcus mutansupon treatment with the biofilm inhibitor carolacton P Sudhakar, M Reck, W Wang, FQ He, IW Dobler, AP Zeng BMC genomics 15, 1-22, 2014 | 19 | 2014 |
| Computational biology and machine learning approaches to understand mechanistic microbiome-host interactions P Sudhakar, K Machiels, B Verstockt, T Korcsmaros, S Vermeire Frontiers in Microbiology 12, 618856, 2021 | 18 | 2021 |
| Tailoring multi-omics to inflammatory bowel diseases: all for one and one for all P Sudhakar, D Alsoud, J Wellens, S Verstockt, K Arnauts, B Verstockt, ... Journal of Crohn's and Colitis 16 (8), 1306-1320, 2022 | 17 | 2022 |
| ViralLink: An integrated workflow to investigate the effect of SARS-CoV-2 on intracellular signalling and regulatory pathways A Treveil, B Bohar, P Sudhakar, L Gul, L Csabai, M Olbei, M Poletti, ... PLOS Computational Biology 17 (2), e1008685, 2021 | 13 | 2021 |
| Holistic healthcare in inflammatory bowel disease: time for patient-centric approaches? P Sudhakar, J Wellens, B Verstockt, M Ferrante, J Sabino, S Vermeire Gut 72 (1), 192-204, 2023 | 11 | 2023 |
| Essential O2-responsive genes of Pseudomonas aeruginosa and their network revealed by integrating dynamic data from inverted conditions FQ He, W Wang, P Zheng, P Sudhakar, J Sun, AP Zeng Integrative biology 6 (2), 215-223, 2014 | 11 | 2014 |
