Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor JL Mateos, NG Bologna, U Chorostecki, JF Palatnik Current Biology 20 (1), 49-54, 2010 | 172 | 2010 |
Spatial control of gene expression by miR319-regulated TCP transcription factors in leaf development EG Bresso, U Chorostecki, RE Rodriguez, JF Palatnik, C Schommer Plant physiology 176 (2), 1694-1708, 2018 | 141 | 2018 |
Multiple RNA recognition patterns during microRNA biogenesis in plants NG Bologna, AL Schapire, J Zhai, U Chorostecki, J Boisbouvier, ... Genome research 23 (10), 1675-1689, 2013 | 129 | 2013 |
Efficiency and precision of microRNA biogenesis modes in plants B Moro, U Chorostecki, S Arikit, IP Suarez, C Höbartner, RM Rasia, ... Nucleic acids research 46 (20), 10709-10723, 2018 | 60 | 2018 |
Evolutionary footprints reveal insights into plant microRNA biogenesis U Chorostecki, B Moro, AML Rojas, JM Debernardi, AL Schapire, ... The Plant Cell 29 (6), 1248-1261, 2017 | 60 | 2017 |
Identification of new microRNA-regulated genes by conserved targeting in plant species U Chorostecki, VA Crosa, AF Lodeyro, NG Bologna, AP Martin, N Carrillo, ... Nucleic Acids Research 40 (18), 8893-8904, 2012 | 59 | 2012 |
PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies D Fuentes, M Molina, U Chorostecki, S Capella-Gutiérrez, ... Nucleic acids research 50 (D1), D1062-D1068, 2022 | 40 | 2022 |
comTAR: a web tool for the prediction and characterization of conserved microRNA targets in plants U Chorostecki, JF Palatnik Bioinformatics 30 (14), 2066-2067, 2014 | 28 | 2014 |
Identification of key sequence features required for microRNA biogenesis in plants AML Rojas, SI Drusin, U Chorostecki, JL Mateos, B Moro, NG Bologna, ... Nature communications 11 (1), 5320, 2020 | 27 | 2020 |
MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life U Chorostecki, M Molina, LP Pryszcz, T Gabaldón Nucleic acids research 48 (W1), W553-W557, 2020 | 27 | 2020 |
Transcriptomic analyses reveal groups of co-expressed, syntenic lncRNAs in four species of the genus Caenorhabditis C Pegueroles, S Iraola-Guzmán, U Chorostecki, E Ksiezopolska, E Saus, ... RNA biology 16 (3), 320-329, 2019 | 21 | 2019 |
Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches LA Bugnon, AA Edera, S Prochetto, M Gerard, J Raad, E Fenoy, ... Briefings in Bioinformatics 23 (4), bbac205, 2022 | 19 | 2022 |
Structural characterization of NORAD reveals a stabilizing role of spacers and two new repeat units U Chorostecki, E Saus, T Gabaldón Computational and Structural Biotechnology Journal 19, 3245-3254, 2021 | 9 | 2021 |
Profiling of RNA structure at single-nucleotide resolution using nextPARS U Chorostecki, JR Willis, E Saus, T Gabaldon RNA Bioinformatics, 51-62, 2021 | 7 | 2021 |
The plant noncoding transcriptome: a versatile environmental sensor U Chorostecki, NG Bologna, F Ariel The EMBO Journal 42 (20), e114400, 2023 | 6 | 2023 |
EvolClustDB: exploring eukaryotic gene clusters with evolutionarily conserved genomic neighbourhoods M Marcet-Houben, I Collado-Cala, D Fuentes-Palacios, AD Gómez, ... Journal of Molecular Biology 435 (14), 168013, 2023 | 6 | 2023 |
A hybrid approach to assess the structural impact of long noncoding RNA mutations uncovers key NEAT1 interactions in colorectal cancer E Aydın, E Saus, U Chorostecki, T Gabaldón IUBMB life 75 (7), 566-579, 2023 | 3 | 2023 |
sincFold: end-to-end learning of short-and long-range interactions for RNA folding L Bugnon, L Di Persia, M Gerard, J Raad, S Prochetto, E Fenoy, ... | 1 | 2023 |
Principles of miRNA/miRNA* function in plant MIRNA processing S Rosatti, AML Rojas, B Moro, IP Suarez, NG Bologna, U Chorostecki, ... Nucleic Acids Research, gkae458, 2024 | | 2024 |
sincFold: end-to-end learning of short-and long-range interactions in RNA secondary structure LA Bugnon, L Di Persia, M Gerard, J Raad, S Prochetto, E Fenoy, ... Briefings in Bioinformatics 25 (4), 2024 | | 2024 |