Metabolic interaction models recapitulate leaf microbiota ecology M Schäfer, AR Pacheco, R Künzler, M Bortfeld-Miller, CM Field, E Vayena, ... Science 381 (6653), eadf5121, 2023 | 64 | 2023 |
From microbiome composition to functional engineering, one step at a time SD Burz, S Causevic, A Dal Co, M Dmitrijeva, P Engel, D Garrido-Sanz, ... Microbiology and Molecular Biology Reviews 87 (4), e00063-23, 2023 | 19 | 2023 |
A workflow for annotating the knowledge gaps in metabolic reconstructions using known and hypothetical reactions E Vayena, A Chiappino-Pepe, H MohammadiPeyhani, Y Francioli, ... Proceedings of the National Academy of Sciences 119 (46), e2211197119, 2022 | 15 | 2022 |
A constraint-based framework to reconstruct interaction networks in microbial communities O Oftadeh, A Sahin, E Vayena, V Hatzimanikatis bioRxiv, 2024.01. 30.577913, 2024 | 1 | 2024 |
NICEgame: A workflow for annotating the knowledge gaps in metabolic reconstructions, using known and hypothetical reactions E Vayena, A Chiappino-Pepe, H MohammadiPeyhani, Y Francioli, ... bioRxiv, 2022.02. 10.479881, 2022 | 1 | 2022 |
Pseudomonas aeruginosa faces a fitness trade-off between mucosal colonization and antibiotic tolerance during airway infection LA Meirelles, E Vayena, A Debache, E Schmidt, T Rossy, T Distler, ... Nature Microbiology, 1-20, 2024 | | 2024 |