Validation of reference genes for quantitative real-time PCR during leaf and flower development in Petunia hybrida I Mallona, S Lischewski, J Weiss, B Hause, M Egea-Cortines BMC Plant Biology 10 (1), 4, 2010 | 334 | 2010 |
Wanderer, an interactive viewer to explore DNA methylation and gene expression data in human cancer A Díez-Villanueva, I Mallona, MA Peinado Epigenetics & Chromatin 8 (22), 2015 | 209 | 2015 |
Aging-like spontaneous epigenetic silencing facilitates Wnt activation, stemness, and BrafV600E-induced tumorigenesis Y Tao, B Kang, DA Petkovich, YR Bhandari, J In, G Stein-O'Brien, X Kong, ... Cancer cell 35 (2), 315-328. e6, 2019 | 130 | 2019 |
Long-term self-renewing stem cells in the adult mouse hippocampus identified by intravital imaging S Bottes, BN Jaeger, GA Pilz, DJ Jörg, JD Cole, M Kruse, L Harris, ... Nature neuroscience 24 (2), 225-233, 2021 | 97 | 2021 |
pcrEfficiency: a Web tool for PCR amplification efficiency prediction I Mallona, J Weiss, M Egea-Cortines BMC Bioinformatics 12 (1), 404, 2011 | 90 | 2011 |
Methylation plotter: a web tool for dynamic visualization of DNA methylation data I Mallona, A Díez-Villanueva, MA Peinado Source code for biology and medicine 9, 1-5, 2014 | 72 | 2014 |
Conserved and Divergent Rhythms of Crassulacean Acid Metabolism-Related and Core Clock Gene Expression in the Cactus Opuntia ficus-indica I Mallona, M Egea-Cortines, J Weiss Plant Physiology 156 (4), 1978-1989, 2011 | 70 | 2011 |
The epigenetic landscape of Alu repeats delineates the structural and functional genomic architecture of colon cancer cells M Jordà, A Díez-Villanueva, I Mallona, B Martín, S Lois, V Barrera, ... Genome Research 27 (1), 118-132, 2017 | 64 | 2017 |
Deconstruction of DNA Methylation Patterns During Myogenesis Reveals Specific Epigenetic Events in the Establishment of the Skeletal Muscle Lineage E Carrió, A Díez‐Villanueva, S Lois, I Mallona, I Cases, M Forn, ... Stem Cells, 2015 | 64 | 2015 |
Flanking sequence preference modulates de novo DNA methylation in the mouse genome I Mallona, IM Ilie, ID Karemaker, S Butz, M Manzo, A Caflisch, T Baubec Nucleic acids research 49 (1), 145-157, 2021 | 17 | 2021 |
Quantification of unmethylated Alu (QUAlu): a tool to assess global hypomethylation in routine clinical samples R Buj, I Mallona, A Díez-Villanueva, V Barrera, D Mauricio, ... Oncotarget 7 (9), 10536, 2016 | 17 | 2016 |
Chainy: an universal tool for standardized relative quantification in real-time PCR I Mallona, A Díez-Villanueva, B Martín, MA Peinado Bioinformatics 33 (9), 1411-1413, 2017 | 16 | 2017 |
Kallikreins stepwise scoring reveals three subtypes of papillary thyroid cancer with prognostic implications R Buj, I Mallona, A Diez-Villanueva, C Zafon, JL Mate, M Roca, ... Thyroid 28 (5), 601-612, 2018 | 15 | 2018 |
Loss of TDP‐43 oligomerization or RNA binding elicits distinct aggregation patterns M Pérez‐Berlanga, VI Wiersma, A Zbinden, L De Vos, U Wagner, ... The EMBO Journal, e111719, 2023 | 12 | 2023 |
The Pancancer DNA methylation trackhub: a window to the cancer genome atlas epigenomics data I Mallona, A Sierco, MA Peinado CpG Islands: Methods and Protocols, 123-135, 2018 | 8 | 2018 |
Truke, a web tool to check for and handle excel misidentified gene symbols I Mallona, MA Peinado BMC genomics 18, 1-3, 2017 | 8 | 2017 |
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability A Sonrel, A Luetge, C Soneson, I Mallona, PL Germain, S Knyazev, J Gilis, ... Genome Biology 24 (1), 119, 2023 | 7 | 2023 |
A knowledgebase of the human Alu repetitive elements I Mallona, M Jordà, MA Peinado Journal of Biomedical Informatics 60, 77-83, 2016 | 6 | 2016 |
Genotyping Antirrhinum commercial varieties using miniature inverted-repeat transposable elements (MITEs) J Weiss, I Mallona, P Gomez-di-Marco, JM Fernández-Valera, ... Scientia Horticulturae 144, 161-167, 2012 | 6 | 2012 |
DNA co-methylation networks outline the structure and remodeling dynamics of colorectal cancer epigenome I Mallona, S Aussó, A Díez-Villanueva, V Moreno, MA Peinado bioRxiv, 2020 | 5* | 2020 |