Detecting SARS-CoV-2 lineages and mutational load in municipal wastewater and a use-case in the metropolitan area of Thessaloniki, Greece N Pechlivanis, M Tsagiopoulou, MC Maniou, A Togkousidis, ... Scientific reports 12 (1), 2659, 2022 | 25 | 2022 |
TRIP-T cell receptor/immunoglobulin profiler MT Kotouza, K Gemenetzi, C Galigalidou, E Vlachonikola, N Pechlivanis, ... BMC bioinformatics 21, 1-21, 2020 | 17 | 2020 |
UMIc: a preprocessing method for UMI deduplication and reads correction M Tsagiopoulou, MC Maniou, N Pechlivanis, A Togkousidis, M Kotrová, ... Frontiers in Genetics 12, 660366, 2021 | 12 | 2021 |
IgIDivA: immunoglobulin intraclonal diversification analysis L Zaragoza-Infante, V Junet, N Pechlivanis, SC Fragkouli, ... Briefings in Bioinformatics 23 (5), bbac349, 2022 | 8 | 2022 |
Chromatin activation profiling of stereotyped chronic lymphocytic leukemias reveals a subset 8–specific signature M Tsagiopoulou, V Chapaprieta, N Russiñol, B García-Torre, ... Blood, The Journal of the American Society of Hematology 141 (24), 2955-2960, 2023 | 4 | 2023 |
Exploring plant diversity through soil DNA in Thai national parks for influencing land reform and agriculture planning M Osathanunkul, N Sawongta, W Pheera, N Pechlivanis, F Psomopoulos, ... PeerJ 9, e11753, 2021 | 4 | 2021 |
InterTADs: integration of multi-omics data on topologically associated domains, application to chronic lymphocytic leukemia M Tsagiopoulou, N Pechlivanis, MC Maniou, F Psomopoulos NAR Genomics and Bioinformatics 4 (1), lqab121, 2022 | 3 | 2022 |
N-Glycosylation of the Ig Receptors Shapes the Antigen Reactivity in Chronic Lymphocytic Leukemia Subset #201 A Iatrou, M Gounari, E Sofou, L Zaragoza-Infante, I Markopoulos, ... The Journal of Immunology 211 (5), 743-754, 2023 | 2 | 2023 |
Evidence of somatic hypermutation in the antigen binding sites of patients with CLL harboring IGHV genes with 100% germline identity E Sofou, L Zaragoza-Infante, N Pechlivanis, G Karakatsoulis, ... Frontiers in Oncology 12, 1079772, 2022 | 2 | 2022 |
Tracking SARS-CoV-2 variants of concern in wastewater: an assessment of nine computational tools using simulated genomic data SG Sutcliffe, SA Kraemer, I Ellmen, JJ Knapp, AK Overton, D Nash, ... Microbial Genomics 10 (5), 001249, 2024 | 1 | 2024 |
Intranuclear inclusions of polyQ-expanded ATXN1 sequester RNA molecules I Gkekas, AC Vagiona, N Pechlivanis, G Kastrinaki, K Pliatsika, S Iben, ... Frontiers in Molecular Neuroscience 16, 1280546, 2023 | 1 | 2023 |
T cell receptor gene repertoire profiles in subgroups of patients with chronic lymphocytic leukemia bearing distinct genomic aberrations E Vlachonikola, N Pechlivanis, G Karakatsoulis, E Sofou, G Gkoliou, ... Frontiers in Oncology 13, 1097942, 2023 | 1 | 2023 |
Molecular and Functional Profiling of Microenvironmental Interactions in Splenic Marginal Zone Lymphoma M Gerousi, A Iatrou, A Mingos, N Pechlivanis, S Ntoufa, M Gounari, ... Blood 140 (Supplement 1), 9294-9295, 2022 | 1 | 2022 |
Microbial co-occurrence network demonstrates spatial and climatic trends for global soil diversity N Pechlivanis, G Karakatsoulis, K Kyritsis, M Tsagiopoulou, S Sgardelis, ... Scientific Data 11 (1), 672, 2024 | | 2024 |
IκBε deficiency accelerates disease development in chronic lymphocytic leukemia J Bordini, C Lenzi, M Frenquelli, A Morabito, A Pseftogas, D Belloni, ... Leukemia 38 (6), 1287-1298, 2024 | | 2024 |
Binning of metagenomic sequencing data N Pechlivanis, FE Psomopoulos Galaxy Training Network, 2024 | | 2024 |
Synth4bench: a framework for generating synthetic genomics data for the evaluation of tumor-only somatic variant calling algorithms SC Fragkouli, N Pechlivanis, A Anastasiadou, G Karakatsoulis, A Orfanou, ... bioRxiv, 2024.03. 07.582313, 2024 | | 2024 |
High risk HPV-positive women cervicovaginal microbial profiles in a Greek cohort: a retrospective analysis of the GRECOSELF study E Sofou, G Gkoliou, N Pechlivanis, K Pasentsis, K Chatzistamatiou, ... Frontiers in Microbiology 14, 1292230, 2023 | | 2023 |
Antigen Receptor Gene Repertoire Profiling in Kidney Transplant Recipients Post-Sars-Cov-2 Vaccination A Mingos, N Pechlivanis, G Karakatsoulis, G Gkoliou, N Vastarouchas, ... Blood 142, 5372, 2023 | | 2023 |
Distinct T Cell Receptor Gene Repertoires and T Cell Subset Distribution in Peripheral Blood and Bone Marrow of Patients with Multiple Myeloma G Gkoliou, N Pechlivanis, S Chatzileontiadou, C Xydopoulou, C Frouzaki, ... Blood 142, 4677, 2023 | | 2023 |