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Shuai Zeng
Shuai Zeng
在 mail.missouri.edu 的电子邮件经过验证
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引用次数
年份
MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction
D Wang, S Zeng, C Xu, W Qiu, Y Liang, T Joshi, D Xu
Bioinformatics 33 (24), 3909-3916, 2017
1942017
12-Hydroxy-Jasmonoyl-l-Isoleucine Is an Active Jasmonate That Signals through CORONATINE INSENSITIVE 1 and Contributes to the Wound Response in …
AN Poudel, RE Holtsclaw, A Kimberlin, S Sen, S Zeng, T Joshi, Z Lei, ...
Plant and Cell Physiology 60 (10), 2152-2166, 2019
392019
PGen: large-scale genomic variations analysis workflow and browser in SoyKB
Y Liu, SM Khan, J Wang, M Rynge, Y Zhang, S Zeng, S Chen, ...
BMC bioinformatics 17 (13), 177-186, 2016
322016
The evolution of soybean knowledge base (SoyKB)
T Joshi, J Wang, H Zhang, S Chen, S Zeng, B Xu, D Xu
Plant Genomics Databases: Methods and Protocols, 149-159, 2017
232017
Transcriptomics analysis reveals new insights into the roles of Notch1 signaling on macrophage polarization
CP Hans, N Sharma, S Sen, S Zeng, R Dev, Y Jiang, A Mahajan, T Joshi
Scientific reports 9 (1), 7999, 2019
212019
Knowledge Base Commons (KBCommons) v1. 1: a universal framework for multi-omics data integration and biological discoveries
S Zeng, Z Lyu, SRK Narisetti, D Xu, T Joshi
BMC genomics 20 (11), 1-16, 2019
152019
Differential regulation of flower transpiration during abiotic stress in annual plants
R Sinha, SI Zandalinas, Y Fichman, S Sen, S Zeng, A Gómez‐Cadenas, ...
New Phytologist 235 (2), 611-629, 2022
132022
Knowledge Base Commons (KBCommons) v1. 0: A multi OMICS'web-based data integration framework for biological discoveries
S Zeng, Z Lyu, SRK Narisetti, D Xu, T Joshi
2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2018
132018
Enhanced CXCR4 expression associates with increased gene body 5-hydroxymethylcytosine modification but not decreased promoter methylation in colorectal cancer
AJ Stuckel, W Zhang, X Zhang, S Zeng, U Dougherty, R Mustafi, Q Zhang, ...
Cancers 12 (3), 539, 2020
122020
G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers
S Zeng, Z Mao, Y Ren, D Wang, D Xu, T Joshi
Nucleic acids research 49 (W1), W228-W236, 2021
112021
Soybean transporter database: A comprehensive database for identification and exploration of natural variants in soybean transporter genes
R Deshmukh, N Rana, Y Liu, S Zeng, G Agarwal, H Sonah, R Varshney, ...
Physiologia Plantarum 171 (4), 756-770, 2021
112021
MUFOLD-DB: a processed protein structure database for protein structure prediction and analysis
Z He, C Zhang, Y Xu, S Zeng, J Zhang, D Xu
BMC genomics 15 (11), 1-7, 2014
112014
SNPViz v2. 0: A web-based tool for enhanced haplotype analysis using large scale resequencing datasets and discovery of phenotypes causative gene using allelic variations
S Zeng, M Škrabišová, Z Lyu, YO Chan, K Bilyeu, T Joshi
2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020
82020
Bioinformatics for plant and agricultural discoveries in the age of multiomics: A review and case study of maize nodal root growth under water deficit
J Wang, S Sidharth, S Zeng, Y Jiang, YO Chan, Z Lyu, T McCubbin, ...
Physiologia Plantarum 174 (2), e13672, 2022
62022
Epigenetic DNA modifications upregulate SPRY2 in human colorectal cancers
AJ Stuckel, S Zeng, Z Lyu, W Zhang, X Zhang, U Dougherty, R Mustafi, ...
Cells 10 (10), 2632, 2021
52021
A novel Synthetic phenotype association study approach reveals the landscape of association for genomic variants and phenotypes
M Škrabišová, N Dietz, S Zeng, YO Chan, J Wang, Y Liu, J Biová, T Joshi, ...
Journal of Advanced Research 42, 117-133, 2022
42022
Application of SNPViz v2. 0 using next-generation sequencing data sets in the discovery of potential causative mutations in candidate genes associated with phenotypes
S Zeng, M Škrabišová, Z Lyu, YO Chan, N Dietz, K Bilyeu, T Joshi
International Journal of Data Mining and Bioinformatics 25 (1-2), 65-85, 2021
32021
Sprouty4 is epigenetically upregulated in human colorectal cancer
AJ Stuckel, S Zeng, Z Lyu, W Zhang, X Zhang, U Dougherty, R Mustafi, ...
Epigenetics 18 (1), 2145068, 2023
22023
A Medicago truncatula Metabolite Atlas Enables the Visualization of Differential Accumulation of Metabolites in Root Tissues
C Kranawetter, S Zeng, T Joshi, LW Sumner
Metabolites 11 (4), 238, 2021
22021
A multiomics discriminatory analysis approach to identify drought-related signatures in maize nodal roots
S Sen, T McCubbin, SK King, LA Greeley, S Zeng, C Baker, R Mertz, ...
2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2020
22020
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