| Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure DH Mathews, MD Disney, JL Childs, SJ Schroeder, M Zuker, DH Turner Proceedings of the National Academy of Sciences 101 (19), 7287-7292, 2004 | 1903 | 2004 |
| Thermodynamic Parameters for an Expanded Nearest-Neighbor Model for Formation of RNA Duplexes with Watson−Crick Base Pairs † T Xia, J SantaLucia Jr, ME Burkard, R Kierzek, SJ Schroeder, X Jiao, ... Biochemistry 37 (42), 14719-14735, 1998 | 1480 | 1998 |
| Optical melting measurements of nucleic acid thermodynamics SJ Schroeder, DH Turner Methods in enzymology 468, 371-387, 2009 | 134 | 2009 |
| Mutations outside the anisomycin-binding site can make ribosomes drug-resistant G Blaha, G Gürel, SJ Schroeder, PB Moore, TA Steitz Journal of molecular biology 379 (3), 505-519, 2008 | 104 | 2008 |
| Factors affecting the thermodynamic stability of small asymmetric internal loops in RNA SJ Schroeder, DH Turner Biochemistry 39 (31), 9257-9274, 2000 | 99 | 2000 |
| The Structures of Antibiotics Bound to the E Site Region of the 50 S Ribosomal Subunit of Haloarcula marismortui: 13-Deoxytedanolide and Girodazole SJ Schroeder, G Blaha, J Tirado-Rives, TA Steitz, PB Moore Journal of molecular biology 367 (5), 1471-1479, 2007 | 62 | 2007 |
| Thermodynamic stabilities of internal loops with GU closing pairs in RNA SJ Schroeder, DH Turner Biochemistry 40 (38), 11509-11517, 2001 | 61 | 2001 |
| Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships SJ Schroeder Journal of virology 83 (13), 6326-6334, 2009 | 55 | 2009 |
| The energetics of small internal loops in RNA SJ Schroeder, ME Burkard, DH Turner Biopolymers: Original Research on Biomolecules 52 (4), 157-167, 1999 | 55 | 1999 |
| Negamycin binds to the wall of the nascent chain exit tunnel of the 50S ribosomal subunit SJ Schroeder, G Blaha, PB Moore Antimicrobial agents and chemotherapy 51 (12), 4462-4465, 2007 | 52 | 2007 |
| Ensemble of secondary structures for encapsidated satellite tobacco mosaic virus RNA consistent with chemical probing and crystallography constraints SJ Schroeder, JW Stone, S Bleckley, T Gibbons, DM Mathews Biophysical journal 101 (1), 167-175, 2011 | 48 | 2011 |
| G⊙ A and U⊙ U mismatches can stabilize RNA internal loops of three nucleotides S Schroeder, J Kim, DH Turner Biochemistry 35 (50), 16105-16109, 1996 | 46 | 1996 |
| Challenges and approaches to predicting RNA with multiple functional structures SJ Schroeder Rna 24 (12), 1615-1624, 2018 | 44 | 2018 |
| NMR Structures of (rGCUGAGGCU)2 and (rGCGGAUGCU)2: Probing the Structural Features That Shape the Thermodynamic Stability of GA Pairs, BS Tolbert, SD Kennedy, SJ Schroeder, TR Krugh, DH Turner Biochemistry 46 (6), 1511-1522, 2007 | 41 | 2007 |
| 3′ terminal nucleotides determine thermodynamic stabilities of mismatches at the ends of RNA helices K Clanton-Arrowood, J McGurk, SJ Schroeder Biochemistry 47 (50), 13418-13427, 2008 | 32 | 2008 |
| Nearest neighbor rules for RNA helix folding thermodynamics: improved end effects J Zuber, SJ Schroeder, H Sun, DH Turner, DH Mathews Nucleic Acids Research 50 (9), 5251-5262, 2022 | 30 | 2022 |
| Thermodynamic stabilities of three-way junction nanomotifs in prohead RNA AC Hill, SJ Schroeder RNA 23 (4), 521-529, 2017 | 21 | 2017 |
| Incorporating global features of RNA motifs in predictions for an ensemble of secondary structures for encapsidated MS2 bacteriophage RNA S Bleckley, SJ Schroeder Rna 18 (7), 1309-1318, 2012 | 21 | 2012 |
| Consecutive terminal GU pairs stabilize RNA helices MT Nguyen, SJ Schroeder Biochemistry 49 (49), 10574-10581, 2010 | 21 | 2010 |
| Thermodynamic Stability and Structural Features of the J4/5 Loop in a Pneumocystis carinii Group I Intron SJ Schroeder, MA Fountain, SD Kennedy, PJ Lukavsky, JD Puglisi, ... Biochemistry 42 (48), 14184-14196, 2003 | 21 | 2003 |
