Common principles and best practices for engineering microbiomes CE Lawson, WR Harcombe, R Hatzenpichler, SR Lindemann, FE Löffler, ... Nature Reviews Microbiology 17 (12), 725-741, 2019 | 406 | 2019 |
Engineering microbial consortia for controllable outputs SR Lindemann, HC Bernstein, HS Song, JK Fredrickson, MW Fields, ... The ISME journal 10 (9), 2077-2084, 2016 | 330 | 2016 |
Dynamics in microbial communities: unraveling mechanisms to identify principles A Konopka, S Lindemann, J Fredrickson The ISME journal 9 (7), 1488-1495, 2015 | 280 | 2015 |
Syntrophic anaerobic photosynthesis via direct interspecies electron transfer PT Ha, SR Lindemann, L Shi, AC Dohnalkova, JK Fredrickson, ... Nature communications 8 (1), 13924, 2017 | 137 | 2017 |
Multiple mechanisms of NADPH oxidase inhibition by type A and type B Francisella tularensis RL McCaffrey, JT Schwartz, SR Lindemann, JG Moreland, BW Buchan, ... Journal of leukocyte biology 88 (4), 791-805, 2010 | 137 | 2010 |
Phototrophic biofilm assembly in microbial-mat-derived unicyanobacterial consortia: model systems for the study of autotroph-heterotroph interactions JK Cole, JR Hutchison, RS Renslow, YM Kim, WB Chrisler, ... Frontiers in microbiology 5, 109, 2014 | 130 | 2014 |
Francisella tularensis Schu S4 O-Antigen and Capsule Biosynthesis Gene Mutants Induce Early Cell Death in Human Macrophages SR Lindemann, K Peng, ME Long, JR Hunt, MA Apicella, DM Monack, ... Infection and immunity 79 (2), 581-594, 2011 | 113 | 2011 |
Identification of migR, a Regulatory Element of the Francisella tularensis Live Vaccine Strain iglABCD Virulence Operon Required for Normal Replication and … BW Buchan, RL McCaffrey, SR Lindemann, LAH Allen, BD Jones Infection and immunity 77 (6), 2517-2529, 2009 | 113 | 2009 |
Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies V Sevim, J Lee, R Egan, A Clum, H Hundley, J Lee, RC Everroad, ... Scientific data 6 (1), 285, 2019 | 106 | 2019 |
The epsomitic phototrophic microbial mat of Hot Lake, Washington: community structural responses to seasonal cycling SR Lindemann, JJ Moran, JC Stegen, RS Renslow, JR Hutchison, ... Frontiers in microbiology 4, 323, 2013 | 103 | 2013 |
EcoFABs: advancing microbiome science through standardized fabricated ecosystems K Zengler, K Hofmockel, NS Baliga, SW Behie, HC Bernstein, JB Brown, ... Nature methods 16 (7), 567-571, 2019 | 101 | 2019 |
Francisella tularensis Genes Required for Inhibition of the Neutrophil Respiratory Burst and Intramacrophage Growth Identified by Random Transposon … GS Schulert, RL McCaffrey, BW Buchan, SR Lindemann, C Hollenback, ... Infection and immunity 77 (4), 1324-1336, 2009 | 98 | 2009 |
Divergent short-chain fatty acid production and succession of colonic microbiota arise in fermentation of variously-sized wheat bran fractions YE Tuncil, RD Thakkar, ADR Marcia, BR Hamaker, SR Lindemann Scientific reports 8 (1), 16655, 2018 | 88 | 2018 |
Disruption of Francisella tularensis Schu S4 iglI, iglJ, and pdpC Genes Results in Attenuation for Growth in Human Macrophages and In Vivo Virulence in Mice and Reveals … ME Long, SR Lindemann, JA Rasmussen, BD Jones, LAH Allen Infection and immunity 81 (3), 850-861, 2013 | 75 | 2013 |
An In Vitro Model System Used To Study Adherence and Invasion of Francisella tularensis Live Vaccine Strain in Nonphagocytic Cells SR Lindemann, MK McLendon, MA Apicella, BD Jones Infection and immunity 75 (6), 3178-3182, 2007 | 69 | 2007 |
Integrating ecological and engineering concepts of resilience in microbial communities HS Song, RS Renslow, JK Fredrickson, SR Lindemann Frontiers in microbiology 6, 1298, 2015 | 64 | 2015 |
Identification and resolution of microdiversity through metagenomic sequencing of parallel consortia WC Nelson, Y Maezato, YW Wu, MF Romine, SR Lindemann Applied and Environmental Microbiology 82 (1), 255-267, 2016 | 55 | 2016 |
Subtle variations in dietary-fiber fine structure differentially influence the composition and metabolic function of gut microbiota YE Tuncil, RD Thakkar, S Arioglu-Tuncil, BR Hamaker, SR Lindemann Msphere 5 (3), 10.1128/msphere. 00180-20, 2020 | 44 | 2020 |
Comparative genomics of the genus Roseburia reveals divergent biosynthetic pathways that may influence colonic competition among species ET Hillman, AJ Kozik, CA Hooker, JL Burnett, Y Heo, VA Kiesel, ... Microbial genomics 6 (7), e000399, 2020 | 43 | 2020 |
Francisella tularensis Schu S4 lipopolysaccharide core sugar and O-antigen mutants are attenuated in a mouse model of tularemia JA Rasmussen, DMB Post, BW Gibson, SR Lindemann, MA Apicella, ... Infection and immunity 82 (4), 1523-1539, 2014 | 41 | 2014 |