A brassinosteroid transcriptional network revealed by genome‐wide identification of BESI target genes in Arabidopsis thaliana X Yu, L Li, J Zola, M Aluru, H Ye, A Foudree, H Guo, S Anderson, S Aluru, ... The Plant Journal 65 (4), 634-646, 2011 | 666 | 2011 |
The maize W22 genome provides a foundation for functional genomics and transposon biology NM Springer, SN Anderson, CM Andorf, KR Ahern, F Bai, O Barad, ... Nature genetics 50 (9), 1282-1288, 2018 | 200 | 2018 |
Genome-wide mapping of transcriptional enhancer candidates using DNA and chromatin features in maize R Oka, J Zicola, B Weber, SN Anderson, C Hodgman, JI Gent, ... Genome Biology 18 (1), 137, 2017 | 155 | 2017 |
Transcriptomes of isolated Oryza sativa gametes characterized by deep sequencing: evidence for distinct sex‐dependent chromatin and epigenetic states before fertilization SN Anderson, CS Johnson, DS Jones, LJ Conrad, X Gou, SD Russell, ... The Plant Journal 76 (5), 729-741, 2013 | 108 | 2013 |
Transposable elements contribute to dynamic genome content in maize SN Anderson, MC Stitzer, AB Brohammer, P Zhou, JM Noshay, ... The Plant Journal 100 (5), 1052-1065, 2019 | 101 | 2019 |
The Genomic Ecosystem of Transposable Elements in Maize MC Stitzer, SN Anderson, NM Springer, J Ross-Ibarra PlOS Genetics, 2021 | 99 | 2021 |
The Zygotic Transition Is Initiated in Unicellular Plant Zygotes with Asymmetric Activation of Parental Genomes SN Anderson, CS Johnson, J Chesnut, DS Jones, I Khanday, ... Developmental Cell 43 (3), 349-358. e4, 2017 | 95 | 2017 |
Monitoring the interplay between transposable element families and DNA methylation in maize JM Noshay, SN Anderson, P Zhou, L Ji, W Ricci, Z Lu, MC Stitzer, ... PLoS genetics 15 (9), e1008291, 2019 | 60 | 2019 |
Dynamic patterns of transcript abundance of transposable element families in maize SN Anderson, MC Stitzer, P Zhou, J Ross-Ibarra, CD Hirsch, NM Springer G3: Genes, Genomes, Genetics 9 (11), 3673-3682, 2019 | 39 | 2019 |
Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways SN Anderson, GJ Zynda, J Song, Z Han, MW Vaughn, Q Li, NM Springer G3: Genes, Genomes, Genetics 8 (6), 1921-1932, 2018 | 31 | 2018 |
Genetic and epigenetic variation in transposable element expression responses to abiotic stress in maize Z Liang, SN Anderson, JM Noshay, PA Crisp, TA Enders, NM Springer Plant Physiology 186 (1), 420-433, 2021 | 26 | 2021 |
Assessing the regulatory potential of transposable elements using chromatin accessibility profiles of maize transposons JM Noshay, AP Marand, SN Anderson, P Zhou, MK Mejia Guerra, Z Lu, ... Genetics, 2021 | 23 | 2021 |
Potential roles for transposable elements in creating imprinted expression SN Anderson, NM Springer Current Opinion in Genetics & Development 49, 8-14, 2018 | 21 | 2018 |
Whole Genome Variation of Transposable Element Insertions in a Maize Diversity Panel Y Qiu, C O'Connor, R Della Coletta, JS Renk, P Monnahan, JM Noshay, ... G3, 2021 | 20 | 2021 |
The maize gene maternal derepression of r1 encodes a DNA glycosylase that demethylates DNA and reduces siRNA expression in the endosperm JI Gent, KM Higgins, KW Swentowsky, FF Fu, Y Zeng, D Kim, RK Dawe, ... The Plant Cell 34 (10), 3685-3701, 2022 | 17 | 2022 |
The evolution and function of transposons in epigenetic regulation in response to the environment SP Klein, SN Anderson Current Opinion in Plant Biology 69, 102277, 2022 | 15 | 2022 |
Reproductive long intergenic noncoding RNAs exhibit male gamete specificity and polycomb repressive complex 2-mediated repression C Johnson, LJ Conrad, R Patel, S Anderson, C Li, A Pereira, ... Plant physiology 177 (3), 1198-1217, 2018 | 14 | 2018 |
Differences in activity and stability drive transposable element variation in tropical and temperate maize. S Ou, T Collins, Y Qiu, AS Seetharam, CC Menard, N Manchanda, JI Gent, ... bioRxiv, 2022 | 12 | 2022 |
Opportunities to Use DNA Methylation to Distil Functional Elements in Large Crop Genomes PA Crisp, JM Noshay, SN Anderson, NM Springer Molecular plant 12 (3), 282-284, 2019 | 11 | 2019 |
Population level variation of transposable elements in a maize diversity panel CH O’Connor, Y Qiu, R Della Coletta, P Monnahan, J Noshay, A Gilbert, ... Scanning Electron Microsc Meet at, 2020 | 10 | 2020 |