| How good is automated protein docking? D Kozakov, D Beglov, T Bohnuud, SE Mottarella, B Xia, DR Hall, S Vajda Proteins: Structure, Function, and Bioinformatics 81 (12), 2159-2166, 2013 | 784 | 2013 |
| The FTMap family of web servers for determining and characterizing ligand-binding hot spots of proteins D Kozakov, LE Grove, DR Hall, T Bohnuud, SE Mottarella, L Luo, B Xia, ... Nature protocols 10 (5), 733-755, 2015 | 597 | 2015 |
| New additions to the ClusPro server motivated by CAPRI S Vajda, C Yueh, D Beglov, T Bohnuud, SE Mottarella, B Xia, DR Hall, ... Proteins: Structure, Function, and Bioinformatics 85 (3), 435-444, 2017 | 507 | 2017 |
| Application of asymmetric statistical potentials to antibody–protein docking R Brenke, DR Hall, GY Chuang, SR Comeau, T Bohnuud, D Beglov, ... Bioinformatics 28 (20), 2608-2614, 2012 | 209 | 2012 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
| FTMAP: extended protein mapping with user-selected probe molecules CH Ngan, T Bohnuud, SE Mottarella, D Beglov, EA Villar, DR Hall, ... Nucleic acids research 40 (W1), W271-W275, 2012 | 168 | 2012 |
| Detection of peptide‐binding sites on protein surfaces: The first step toward the modeling and targeting of peptide‐mediated interactions A Lavi, CH Ngan, D Movshovitz‐Attias, T Bohnuud, C Yueh, D Beglov, ... Proteins: Structure, Function, and Bioinformatics 81 (12), 2096-2105, 2013 | 118 | 2013 |
| ClusPro PeptiDock: efficient global docking of peptide recognition motifs using FFT KA Porter, B Xia, D Beglov, T Bohnuud, N Alam, O Schueler-Furman, ... Bioinformatics 33 (20), 3299-3301, 2017 | 113 | 2017 |
| Improved cytosine base editors generated from TadA variants DK Lam, PR Feliciano, A Arif, T Bohnuud, TP Fernandez, JM Gehrke, ... Nature Biotechnology 41 (5), 686-697, 2023 | 55 | 2023 |
| Computational mapping reveals dramatic effect of Hoogsteen breathing on duplex DNA reactivity with formaldehyde T Bohnuud, D Beglov, CH Ngan, B Zerbe, DR Hall, R Brenke, S Vajda, ... Nucleic acids research 40 (16), 7644-7652, 2012 | 52 | 2012 |
| A benchmark testing ground for integrating homology modeling and protein docking T Bohnuud, L Luo, SJ Wodak, AMJJ Bonvin, Z Weng, S Vajda, ... Proteins: Structure, Function, and Bioinformatics 85 (1), 10-16, 2017 | 35 | 2017 |
| Evidence of conformational selection driving the formation of ligand binding sites in protein-protein interfaces T Bohnuud, D Kozakov, S Vajda PLoS Computational Biology 10 (10), e1003872, 2014 | 30 | 2014 |
| Quantifying the nativeness of antibody sequences using long short-term memory networks AM Wollacott, C Xue, Q Qin, J Hua, T Bohnuud, K Viswanathan, ... Protein Engineering, Design and Selection 32 (7), 347-354, 2019 | 26 | 2019 |
| Focused grid‐based resampling for protein docking and mapping AB Mamonov, M Moghadasi, H Mirzaei, S Zarbafian, LE Grove, ... Journal of computational chemistry 37 (11), 961-970, 2016 | 16 | 2016 |
| Detection of peptide-binding sites on protein surfaces using the peptimap server T Bohnuud, G Jones, O Schueler-Furman, D Kozakov Modeling Peptide-Protein Interactions: Methods and Protocols, 11-20, 2017 | 15 | 2017 |
| Conversion of HbS to Hb G-makassar by adenine base editing is compatible with normal hemoglobin function SH Chu, M Ortega, P Feliciano, V Winton, C Xu, D Haupt, T McDonald, ... Blood 138, 951, 2021 | 14 | 2021 |
| A proteomic platform to identify off-target proteins associated with therapeutic modalities that induce protein degradation or gene silencing X Liu, Y Zhang, LD Ward, Q Yan, T Bohnuud, R Hernandez, S Lao, ... Scientific Reports 11 (1), 15856, 2021 | 12 | 2021 |
| A novel base editing approach to directly edit the causative mutation in sickle cell disease SH Chu, MS Packer, JR Olins, G Lung, LI Cheng, A Liquori, C Lee, ... Mol. Ther 28 (808), 10.1016, 2020 | 3 | 2020 |
| Engineered stem cell antibody paired evasion-2 (escape-2): paired hsc epitope engineering and direct editing of sickle allele for antibody-mediated autologous hematopoietic … SH Chu, E Budak, N Mondal, K Zhang, A Harmon, J Wong, D Lam, ... Blood 140 (Supplement 1), 10213-10214, 2022 | 2 | 2022 |
| Adenine base editing of the sickle allele in CD34+ hematopoietic stem and progenitor cells eliminates hemoglobin S SH Chu, D Lam, MS Packer, J Olins, A Liquori, J Marshall, C Lee, B Yan, ... Blood 136, 47, 2020 | 2 | 2020 |
