| Identification of cytokinin-responsive genes using microarray meta-analysis and RNA-Seq in Arabidopsis A Bhargava, I Clabaugh, JP To, BB Maxwell, YH Chiang, GE Schaller, ... Plant Physiology 162 (1), 272-294, 2013 | 254 | 2013 |
| Cytokinin induces genome-wide binding of the type-B response regulator ARR10 to regulate growth and development in Arabidopsis YO Zubo, IC Blakley, MV Yamburenko, JM Worthen, IH Street, ... Proceedings of the National Academy of Sciences 114 (29), E5995-E6004, 2017 | 184 | 2017 |
| RNA-Seq analysis and annotation of a draft blueberry genome assembly identifies candidate genes involved in fruit ripening, biosynthesis of bioactive compounds, and stage … V Gupta, AD Estrada, I Blakley, R Reid, K Patel, MD Meyer, SU Andersen, ... Gigascience 4 (1), s13742-015-0046-9, 2015 | 162 | 2015 |
| Air pollution exposure is associated with the gut microbiome as revealed by shotgun metagenomic sequencing F Fouladi, MJ Bailey, WB Patterson, M Sioda, IC Blakley, AA Fodor, ... Environment international 138, 105604, 2020 | 121 | 2020 |
| Coordination of chloroplast development through the action of the GNC and GLK transcription factor families YO Zubo, IC Blakley, JM Franco-Zorrilla, MV Yamburenko, R Solano, ... Plant physiology 178 (1), 130-147, 2018 | 104 | 2018 |
| Analysis and visualization of RNA-Seq expression data using RStudio, Bioconductor, and Integrated Genome Browser AE Loraine, IC Blakley, S Jagadeesan, J Harper, G Miller, N Firon Plant Functional Genomics: Methods and Protocols, 481-501, 2015 | 88 | 2015 |
| RNA-Seq links the transcription factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to cell wall remodeling and plant defense pathways BA Krizek, CJ Bequette, K Xu, IC Blakley, ZQ Fu, JW Stratmann, ... Plant Physiology 171 (3), 2069-2084, 2016 | 58 | 2016 |
| The Arabidopsis transcription factor AINTEGUMENTA orchestrates patterning genes and auxin signaling in the establishment of floral growth and form BA Krizek, IC Blakley, YY Ho, N Freese, AE Loraine The Plant Journal 103 (2), 752-768, 2020 | 54 | 2020 |
| Characterization of the cytokinin-responsive transcriptome in rice T Raines, IC Blakley, YC Tsai, JM Worthen, JM Franco-Zorrilla, R Solano, ... BMC Plant Biology 16, 1-16, 2016 | 42 | 2016 |
| A comparison of transgenic and wild type soybean seeds: analysis of transcriptome profiles using RNA-Seq KC Lambirth, AM Whaley, IC Blakley, JA Schlueter, KL Bost, AE Loraine, ... BMC biotechnology 15, 1-17, 2015 | 35 | 2015 |
| On the robustness of inference of association with the gut microbiota in stool, rectal swab and mucosal tissue samples S Sun, X Zhu, X Huang, HJ Murff, RM Ness, DL Seidner, AA Sorgen, ... Scientific Reports 11 (1), 14828, 2021 | 30 | 2021 |
| Race, the vaginal microbiome, and spontaneous preterm birth S Sun, MG Serrano, JM Fettweis, P Basta, E Rosen, K Ludwig, AA Sorgen, ... Msystems 7 (3), e00017-22, 2022 | 20 | 2022 |
| Analysis of pollen-specific alternative splicing in Arabidopsis thaliana via semi-quantitative PCR AD Estrada, NH Freese, IC Blakley, AE Loraine PeerJ 3, e919, 2015 | 11 | 2015 |
| Microbial associations with microscopic colitis S Sun, IC Blakley, AA Fodor, TO Keku, JT Woosley, AF Peery, RS Sandler Clinical and translational gastroenterology 13 (10), e00528, 2022 | 5 | 2022 |
| On the robustness of inference of association with the gut microbiota in stool, swab and mucosal tissue samples S Sun, X Zhu, X Huang, HJ Murff, RM Ness, DL Seidner, A Sorgen, ... bioRxiv, 2021.02. 04.429844, 2021 | 3 | 2021 |
| Many rice genes are differentially spliced between roots and shoots but cytokinin has minimal effect on splicing NH Freese, AR Estrada, IC Blakley, J Duan, AE Loraine Plant Direct 3 (5), e00136, 2019 | 2 | 2019 |
| Disentangling race, environment and the microbiome in a study of preterm birth risk S Sun, M Serrano, J Fettweis, P Basta, E Rosen, K Ludwig, A Sorgen, ... | 1 | 2021 |
| Exposure to ambient air pollutants is associated with the composition of the gut microbiome in adolescents from Southern California T Alderete, F Fouladi, M Sioda, A Fodor, I Blakley, R Knight, Z Chen, J Kim, ... Environmental Epidemiology 3, 6-7, 2019 | 1 | 2019 |
| An integrative analysis of the biological clock hypothesis in human gut microbiome AD Moss, S Sun, IC Blakley, AA Fodor bioRxiv, 2022.03. 22.485238, 2022 | | 2022 |
