| GASAL2: a GPU accelerated sequence alignment library for high-throughput NGS data N Ahmed, J Lévy, S Ren, H Mushtaq, K Bertels, Z Al-Ars BMC bioinformatics 20 (1), 520, 2019 | 92 | 2019 |
| Heterogeneous hardware/software acceleration of the BWA-MEM DNA alignment algorithm N Ahmed, VM Sima, E Houtgast, K Bertels, Z Al-Ars 2015 IEEE/ACM International Conference on Computer-Aided Design (ICCAD), 240-246, 2015 | 64 | 2015 |
| A comparison of seed-and-extend techniques in modern DNA read alignment algorithms N Ahmed, K Bertels, Z Al-Ars 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2016 | 52 | 2016 |
| GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller S Ren, N Ahmed, K Bertels, Z Al-Ars BMC genomics 20, 103-116, 2019 | 24 | 2019 |
| GPU accelerated API for alignment of genomics sequencing data N Ahmed, H Mushtaq, K Bertels, Z Al-Ars 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2017 | 13 | 2017 |
| GPU acceleration of Darwin read overlapper for de novo assembly of long DNA reads N Ahmed, TD Qiu, K Bertels, Z Al-Ars BMC bioinformatics 21, 1-17, 2020 | 12 | 2020 |
| ArrowSAM: In-Memory Genomics Data Processing Using Apache Arrow T Ahmad, N Ahmed, J Peltenburg, Z Al-Ars 2020 3rd International Conference on Computer Applications & Information …, 2020 | 11 | 2020 |
| Streaming Distributed DNA Sequence Alignment Using Apache Spark H Mushtaq, N Ahmed, Z Al-Ars 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017 | 11 | 2017 |
| Optimizing performance of GATK workflows using Apache Arrow In-Memory data framework T Ahmad, N Ahmed, Z Al-Ars, HP Hofstee BMC genomics 21, 1-14, 2020 | 10 | 2020 |
| SparkGA2: Production-quality memory-efficient Apache Spark based genome analysis framework H Mushtaq, N Ahmed, Z Al-Ars Plos one 14 (12), e0224784, 2019 | 10 | 2019 |
| An Efficient GPU-Based de Bruijn Graph Construction Algorithm for Micro-Assembly S Ren, N Ahmed, K Bertels, Z Al-Ars 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering …, 2018 | 7 | 2018 |
| SALoBa: Maximizing Data Locality and Workload Balance for Fast Sequence Alignment on GPUs S Park, H Kim, T Ahmad, N Ahmed, Z Al-Ars, HP Hofstee, Y Kim, J Lee 2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS …, 2022 | 5 | 2022 |
| Efficient GPU Acceleration for Computing Maximal Exact Matches in Long DNA Reads N Ahmed, K Bertels, Z Al-Ars Proceedings of the 2020 10th International Conference on Bioscience …, 2020 | 3 | 2020 |
| High Performance Seed-and-Extend Algorithms for Genomics N Ahmed | 2 | 2020 |
| Predictive Genome Analysis Using Partial DNA Sequencing Data N Ahmed, K Bertels, Z Al-Ars 2017 IEEE 17th International Conference on Bioinformatics and Bioengineering …, 2017 | 2 | 2017 |
| ArrowSAM: In-Memory Genomics Data Processing through Apache Arrow Framework T Ahmad, J Peltenburg, N Ahmed, Z Al-Ars bioRxiv, 741843, 2019 | 1 | 2019 |
| Pantools: Pangenomics to Utilize the Wealth of High-Quality Genomes DJM van Workum, EM Jonkheer, R van Esch, M Moed, T van Lankveld, ... Plant and Animal Genome Conference/PAG 31 (January 12-17, 2024), 2024 | | 2024 |
| Early DNA Variant Calling Using Incomplete DNA Datasets Z Al-Ars, N Ahmed, K Bertels | | 2018 |
Zaid Al-ArsProfessor of Computer Engineering, Delft University of Technology在 tudelft.nl 的电子邮件经过验证
