HIPPIE v2. 0: enhancing meaningfulness and reliability of protein–protein interaction networks G Alanis-Lobato, MA Andrade-Navarro, MH Schaefer Nucleic acids research, gkw985, 2016 | 480 | 2016 |
From link-prediction in brain connectomes and protein interactomes to the local-community-paradigm in complex networks CV Cannistraci, G Alanis-Lobato, T Ravasi Scientific reports 3 (1), 1613, 2013 | 436 | 2013 |
Initiation of a conserved trophectoderm program in human, cow and mouse embryos C Gerri, A McCarthy, G Alanis-Lobato, A Demtschenko, A Bruneau, ... Nature 587 (7834), 443-447, 2020 | 202 | 2020 |
Frequent loss of heterozygosity in CRISPR-Cas9–edited early human embryos G Alanis-Lobato, J Zohren, A McCarthy, NME Fogarty, N Kubikova, ... Proceedings of the National Academy of Sciences 118 (22), e2004832117, 2021 | 195 | 2021 |
Minimum curvilinearity to enhance topological prediction of protein interactions by network embedding CV Cannistraci, G Alanis-Lobato, T Ravasi Bioinformatics 29 (13), i199-i209, 2013 | 147 | 2013 |
Efficient embedding of complex networks to hyperbolic space via their Laplacian G Alanis-Lobato, P Mier, MA Andrade-Navarro Scientific reports 6 (1), 30108, 2016 | 85 | 2016 |
IGF1-mediated human embryonic stem cell self-renewal recapitulates the embryonic niche SE Wamaitha, KJ Grybel, G Alanis-Lobato, C Gerri, S Ogushi, A McCarthy, ... Nature communications 11 (1), 764, 2020 | 52 | 2020 |
Manifold learning and maximum likelihood estimation for hyperbolic network embedding G Alanis-Lobato, P Mier, MA Andrade-Navarro Applied network science 1, 1-14, 2016 | 46 | 2016 |
Highlighting nonlinear patterns in population genetics datasets G Alanis-Lobato, CV Cannistraci, A Eriksson, A Manica, T Ravasi Scientific reports 5 (1), 8140, 2015 | 45 | 2015 |
C ontext characterization of amino acid homorepeats using evolution, position, and order P Mier, G Alanis‐Lobato, MA Andrade‐Navarro Proteins: Structure, Function, and Bioinformatics 85 (4), 709-719, 2017 | 38 | 2017 |
The latent geometry of the human protein interaction network G Alanis-Lobato, P Mier, M Andrade-Navarro Bioinformatics 34 (16), 2826-2834, 2018 | 32 | 2018 |
Protein-protein interactions can be predicted using coiled coil co-evolution patterns P Mier, G Alanis-Lobato, MA Andrade-Navarro Journal of Theoretical Biology 412, 198-203, 2017 | 27 | 2017 |
Evolutionary study of disorder in protein sequences K Kastano, G Erdős, P Mier, G Alanis-Lobato, VJ Promponas, Z Dosztányi, ... Biomolecules 10 (10), 1413, 2020 | 24 | 2020 |
Transdifferentiation of mouse embryonic fibroblasts into dopaminergic neurons reactivates LINE-1 repetitive elements F Della Valle, MP Thimma, M Caiazzo, S Pulcrano, M Celii, SA Adroub, ... Stem Cell Reports 14 (1), 60-74, 2020 | 22 | 2020 |
Mining protein interactomes to improve their reliability and support the advancement of network medicine G Alanis-Lobato Frontiers in genetics 6, 296, 2015 | 19 | 2015 |
Exploitation of genetic interaction network topology for the prediction of epistatic behavior G Alanis-Lobato, CV Cannistraci, T Ravasi Genomics 102 (4), 202-208, 2013 | 18 | 2013 |
Interaction profiling of RNA-binding ubiquitin ligases reveals a link between posttranscriptional regulation and the ubiquitin system A Hildebrandt, G Alanis-Lobato, A Voigt, K Zarnack, MA Andrade-Navarro, ... Scientific reports 7 (1), 16582, 2017 | 17 | 2017 |
Nuclear inclusions of pathogenic ataxin-1 induce oxidative stress and perturb the protein synthesis machinery S Laidou, G Alanis-Lobato, J Pribyl, T Raskó, B Tichy, K Mikulasek, ... Redox Biology 32, 101458, 2020 | 16 | 2020 |
MIPPIE: the mouse integrated protein–protein interaction reference G Alanis-Lobato, JS Möllmann, MH Schaefer, MA Andrade-Navarro Database 2020, baaa035, 2020 | 12 | 2020 |
MICA: a multi-omics method to predict gene regulatory networks in early human embryos G Alanis-Lobato, TE Bartlett, Q Huang, CS Simon, A McCarthy, K Elder, ... Life Science Alliance 7 (1), 2024 | 11 | 2024 |