| Identification of the central intermediate in the extra-embryonic to embryonic endoderm transition through single-cell transcriptomics MM Rothová, AV Nielsen, M Proks, YF Wong, AR Riveiro, ... Nature cell biology 24 (6), 833-844, 2022 | 19 | 2022 |
| Transcriptional heterogeneity and cell cycle regulation as central determinants of primitive endoderm priming M Perera, SB Nissen, M Proks, S Pozzi, RS Monteiro, A Trusina, ... Elife 11, e78967, 2022 | 16 | 2022 |
| A bipartite function of ESRRB can integrate signaling over time to balance self-renewal and differentiation TE Knudsen, WB Hamilton, M Proks, M Lykkegaard, ... Cell Systems 14 (9), 788-805. e8, 2023 | 9 | 2023 |
| Transcription factor co-expression mediates lineage priming for embryonic and extra-embryonic differentiation A Redó-Riveiro, J Al-Mousawi, M Linneberg-Agerholm, M Proks, ... Stem Cell Reports 19 (2), 174-186, 2024 | 8 | 2024 |
| The primitive endoderm supports lineage plasticity to enable regulative development M Linneberg-Agerholm, AC Sell, A Redó-Riveiro, M Perera, M Proks, ... Cell 187 (15), 4010-4029. e16, 2024 | 6 | 2024 |
| Expansion of ventral foregut is linked to changes in the enhancer landscape for organ-specific differentiation YF Wong, Y Kumar, M Proks, JAR Herrera, MM Rothová, RS Monteiro, ... Nature cell biology 25 (3), 481-492, 2023 | 6 | 2023 |
| nf-core/marsseq: systematic pre-processing pipeline for MARS-seq experiments M Proks, JAR Herrera, J Sedzinski, JM Brickman bioRxiv, 2023.06. 28.546862, 2023 | 4 | 2023 |
| Deep learning based models for preimplantation mouse and human development M Proks, N Salehin, JM Brickman bioRxiv, 2024.02. 16.580649, 2024 | 2 | 2024 |
| Deep learning-based models for preimplantation mouse and human embryos based on single-cell RNA sequencing M Proks, N Salehin, JM Brickman Nature Methods, 1-10, 2024 | 1 | 2024 |
| Transcription Factor Co-Expression Mediates Lineage Priming for Embryonic and Extra-Embryonic Differentiation A Redó-Riveiro, J Al-Mousawi, M Linneberg-Agerholm, M Proks, ... bioRxiv, 2023.03. 27.534339, 2023 | 1 | 2023 |
| Expansion of ventral foregut primes the enhancer landscape for organ specific differentiation YF Wong, Y Kumar, M Proks, JAR Herrera, MM Rothová, RS Monteiro, ... bioRxiv, 2022.04. 11.487673, 2022 | 1 | 2022 |
| Enhancer status in the primitive endoderm supports unrestricted lineage plasticity in regulative development M Linneberg-Agerholm, AC Sell, A Redo-Riveiro, M Proks, TE Knudsen, ... bioRxiv, 2023.05. 20.540779, 2023 | | 2023 |
| Analysis of genome sequencing data with a minimal investment IT-infrastructure J Alneberg, MU Garcia, A Peltzer, T Koch, M Proks, A Wilm, PA Ewels European Journal of Human Genetics 27 (Suppl. 2), 1706, 2019 | | 2019 |
