Drug search for leishmaniasis: a virtual screening approach by grid computing R Ochoa, SJ Watowich, A Flórez, CV Mesa, SM Robledo, C Muskus Journal of computer-aided molecular design 30, 541-552, 2016 | 45 | 2016 |
Predicting the affinity of peptides to major histocompatibility complex class II by scoring molecular dynamics simulations R Ochoa, A Laio, P Cossio Journal of Chemical Information and Modeling 59 (8), 3464-3473, 2019 | 38 | 2019 |
Anti-herpetic, anti-dengue and antineoplastic activities of simple and heterocycle-fused derivatives of terpenyl-1, 4-naphthoquinone and 1, 4-anthraquinone VC Roa-Linares, Y Miranda-Brand, V Tangarife-Castaño, R Ochoa, ... Molecules 24 (7), 1279, 2019 | 34 | 2019 |
myChEMBL: a virtual machine implementation of open data and cheminformatics tools R Ochoa, M Davies, G Papadatos, F Atkinson, JP Overington Bioinformatics 30 (2), 298-300, 2014 | 25 | 2014 |
Repurposing of known drugs for leishmaniasis treatment using bioinformatic predictions, in vitro validations and pharmacokinetic simulations C Bustamante, R Ochoa, C Asela, C Muskus Journal of Computer-Aided Molecular Design 33, 845-854, 2019 | 24 | 2019 |
Assessing the capability of in silico mutation protocols for predicting the finite temperature conformation of amino acids R Ochoa, MA Soler, A Laio, P Cossio Physical Chemistry Chemical Physics 20 (40), 25901-25909, 2018 | 23 | 2018 |
MyChEMBL: a virtual platform for distributing cheminformatics tools and open data M Davies, M Nowotka, G Papadatos, F Atkinson, GJP Van Westen, ... Challenges 5 (2), 334-337, 2014 | 23 | 2014 |
Toxic Activity, Molecular Modeling and Docking Simulations of Bacillus thuringiensis Cry11 Toxin Variants Obtained via DNA Shuffling AM Florez, MO Suarez-Barrera, GM Morales, KV Rivera, S Orduz, ... Frontiers in Microbiology 9, 2461, 2018 | 22 | 2018 |
Perspectives for the structure-based design of acetylcholinesterase reactivators R Ochoa, CA Rodriguez, AF Zuluaga Journal of Molecular Graphics and Modelling, 2016 | 20 | 2016 |
Application of ensemble pharmacophore-based virtual screening to the discovery of novel antimitotic tubulin inhibitors L Gallego-Yerga, R Ochoa, I Lans, C Peña-Varas, M Alegría-Arcos, ... Computational and Structural Biotechnology Journal 19, 4360-4372, 2021 | 18 | 2021 |
The Akt-like kinase of Leishmania panamensis: As a new molecular target for drug discovery D Tirado-Duarte, M Marín-Villa, R Ochoa, G Blandón-Fuentes, MJ Soares, ... Acta tropica 177, 171-178, 2018 | 17 | 2018 |
PepFun: open source protocols for peptide-related computational analysis R Ochoa, P Cossio Molecules 26 (6), 1664, 2021 | 15 | 2021 |
PARCE: protocol for amino acid refinement through computational evolution R Ochoa, MA Soler, A Laio, P Cossio Computer Physics Communications 260, 107716, 2021 | 15 | 2021 |
dockECR: Open consensus docking and ranking protocol for virtual screening of small molecules R Ochoa, K Palacio-Rodriguez, CM Clemente, NS Adler Journal of Molecular Graphics and Modelling 109, 108023, 2021 | 14 | 2021 |
Multiple-allele MHC class II epitope engineering by a molecular dynamics-based evolution protocol R Ochoa, VAS Lunardelli, DS Rosa, A Laio, P Cossio Frontiers in Immunology 13, 862851, 2022 | 12 | 2022 |
Furanchalcone–biphenyl hybrids: synthesis, in silico studies, antitrypanosomal and cytotoxic activities E García, R Ochoa, I Vásquez, L Conesa-Milián, M Carda, A Yepes, ... Medicinal Chemistry Research 28, 608-622, 2019 | 11 | 2019 |
In silico screening of potential drug with antileishmanial activity and validation of their activity by in vitro and in vivo studies CV Mesa, GA Blandón, DL Muñoz, CE Muskus, AF Flórez, R Ochoa, ... J Chem Chem Eng 9, 375-402, 2015 | 11 | 2015 |
An automated protocol for modelling peptide substrates to proteases R Ochoa, M Magnitov, RA Laskowski, P Cossio, JM Thornton BMC bioinformatics 21, 1-20, 2020 | 10 | 2020 |
In silico search of inhibitors of Streptococcus mutans for the control of dental plaque R Ochoa, MC Martínez-Pabón, MA Arismendi-Echeverri, ... Archives of oral biology 83, 68-75, 2017 | 10 | 2017 |
Virtual and experimental screening of phenylfuranchalcones as potential anti-Leishmania candidates R Ochoa, E García, SM Robledo Journal of Molecular Graphics and Modelling 91, 164-171, 2019 | 9 | 2019 |