3D-NuS: a web server for automated modeling and visualization of non-canonical 3-dimensional nucleic acid structures LPP Patro, A Kumar, N Kolimi, T Rathinavelan Journal of molecular biology 429 (16), 2438-2448, 2017 | 53 | 2017 |
Specific conformational dynamics and expansion underpin a multi-step mechanism for specific binding of p27 with Cdk2/Cyclin A M Tsytlonok, K Hemmen, G Hamilton, N Kolimi, S Felekyan, CAM Seidel, ... Journal of molecular biology 432 (9), 2998-3017, 2020 | 33 | 2020 |
Twisting right to left: A… A mismatch in a CAG trinucleotide repeat overexpansion provokes left-handed Z-DNA conformation N Khan, N Kolimi, T Rathinavelan PLoS computational biology 11 (4), e1004162, 2015 | 28 | 2015 |
Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS Y Ajjugal, N Kolimi, T Rathinavelan Scientific Reports 11 (1), 8163, 2021 | 21 | 2021 |
Out-of-equilibrium biophysical chemistry: the case for multidimensional, integrated single-molecule approaches N Kolimi, A Pabbathi, N Saikia, F Ding, H Sanabria, J Alper The Journal of Physical Chemistry B 125 (37), 10404-10418, 2021 | 13 | 2021 |
AB–Z junction induced by an A… A mismatch in GAC repeats in the gene for cartilage oligomeric matrix protein promotes binding with the hZαADAR1 protein N Kolimi, Y Ajjugal, T Rathinavelan Journal of Biological Chemistry 292 (46), 18732-18746, 2017 | 9 | 2017 |
Key diffusion mechanisms involved in regulating bidirectional water permeation across E. coli outer membrane lectin S Sachdeva, N Kolimi, SA Nair, T Rathinavelan Scientific Reports 6 (1), 28157, 2016 | 9 | 2016 |
Domain tethering impacts dimerization and DNA-mediated allostery in the human transcription factor FoxP1 P Cruz, N Paredes, I Asela, N Kolimi, JA Molina, CA Ramírez-Sarmiento, ... The Journal of Chemical Physics 158 (19), 2023 | 3 | 2023 |
DNA controls the dimerization of the human FoxP1 forkhead domain N Kolimi, J Ballard, T Peulen, R Goutam, FX Duffy, CA Ramírez-Sarmiento, ... Cell Reports Physical Science 5 (3), 2024 | | 2024 |
DNA-induces intra-and inter-molecular changes in dimerization of the human FOXP1 N Kolimi, TOO Peulen, JH Ballard, JAM Ramirez, CA Ramirez-Sarmiento, ... Biophysical Journal 122 (3), 430a, 2023 | | 2023 |
Integrative structural dynamics of calmodulin showcases sequence-to-function N Kolimi, A Krishnamohan, R Goutam, F Morcos, H Sanabria Biophysical Journal 121 (3), 43a, 2022 | | 2022 |
Secondary structural choice of DNA and RNA associated with CGG/CCG trinucleotide repeat expansion rationalizes the RNA misprocessing in FXTAS T Rathinavelan, Y Ajjugal, N Kolimi Nature Research, 2021 | | 2021 |
Ensemble Switching of the DNA-Binding Domain of Human FoxP1 N Kolimi, E Medina, C Ramírez-Sarmiento, H Sanabria, J Babul Biophysical Journal 120 (3), 18a, 2021 | | 2021 |
Sequence and Structure Based Approach for Automated FRET Network Design GL Hamilton, H Sanabria, F Morcos, N Kolimi, A Krishnamohan Biophysical Journal 120 (3), 188a, 2021 | | 2021 |
Expansion Upon Binding Guides p27 Binding to Cdk2/cyclinA M Tsytlonok, K Hemmen, GL Hamilton, N Kolimi, S Felekyan, CA Seidel, ... Biophysical Journal 118 (3), 371a, 2020 | | 2020 |
Integrated Structural Dynamics of Calmodulin N Kolimi Biophysical Journal 118 (3), 40a, 2020 | | 2020 |
New structural insights into unusual nucleic acid conformations in relevance to mechanisms and pathogeneses of trinucleotide repeat expansion disorders N Kolimi IIT HYDERABAD, 2018 | | 2018 |
A BZ junction induced by an A... A mismatch in GAC repeats in the gene for cartilage oligomeric matrix protein promotes binding with the HzαADAR1protei T Rathinavelan, Y Ajjugal, N Kolimi American Society for Biochemistry and Molecular Biology Inc., 2017 | | 2017 |
3D-NuS: A Web Server for Automated Modeling and Visualization of Non-Canonical 3-Dimensional Nucleic Acid Structures T Rathinavelan, LPP Patro, A Kumar, N Kolimi Academic Press, 2017 | | 2017 |
Key diffusion mechanisms involved in regulating bidirectional water permeation across E. coli outer membrane lectin T Rathinavelan, SA Nair, N Kolimi, S Sachdeva Nature Publishing Group, 2016 | | 2016 |