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Seyit Kale
Seyit Kale
Izmir Biomedicine and Genome Center & Izmir Katip Celebi University
在 ibg.edu.tr 的电子邮件经过验证 - 首页
标题
引用次数
引用次数
年份
Distinct structures and dynamics of chromatosomes with different human linker histone isoforms
BR Zhou, H Feng, S Kale, T Fox, H Khant, N de Val, R Ghirlando, ...
Molecular Cell 81 (1), 166-182. e6, 2021
952021
Lewis-inspired representation of dissociable water in clusters and Grotthuss chains
S Kale, J Herzfeld, S Dai, M Blank
Journal of biological physics 38, 49-59, 2012
412012
Phase-plate cryo-EM structure of the Widom 601 CENP-A nucleosome core particle reveals differential flexibility of the DNA ends
R Boopathi, R Danev, M Khoshouei, S Kale, S Nahata, L Ramos, ...
Nucleic acids research 48 (10), 5735-5748, 2020
382020
Proton defect solvation and dynamics in aqueous acid and base
S Kale, J Herzfeld
Angewandte Chemie (International ed. in English) 51 (44), 11029, 2012
352012
Natural polarizability and flexibility via explicit valency: The case of water
S Kale, J Herzfeld
The Journal of chemical physics 136 (8), 2012
302012
Histone octamer structure is altered early in ISW2 ATP-dependent nucleosome remodeling
A Hada, SK Hota, J Luo, Y Lin, S Kale, AK Shaytan, SK Bhardwaj, ...
Cell reports 28 (1), 282-294. e6, 2019
282019
Pairwise long-range compensation for strongly ionic systems
S Kale, J Herzfeld
Journal of chemical theory and computation 7 (11), 3620-3624, 2011
262011
Molecular recognition of nucleosomes by binding partners
S Kale, A Goncearenco, Y Markov, D Landsman, AR Panchenko
Current opinion in structural biology 56, 164-170, 2019
252019
Unraveling linker histone interactions in nucleosomes
F Hao, S Kale, S Dimitrov, JJ Hayes
Current opinion in structural biology 71, 87-93, 2021
242021
Transferable pseudoclassical electrons for aufbau of atomic ions
S Ekesan, S Kale, J Herzfeld
Journal of computational chemistry 35 (15), 1159-1164, 2014
182014
Multiple time-step dual-hamiltonian hybrid molecular dynamics–monte carlo canonical propagation algorithm
Y Chen, S Kale, J Weare, AR Dinner, B Roux
Journal of chemical theory and computation 12 (4), 1449-1458, 2016
142016
Chemistry with semi-classical electrons: reaction trajectories auto-generated by sub-atomistic force fields
C Bai, S Kale, J Herzfeld
Chemical Science 8 (6), 4203-4210, 2017
132017
Potential regulatory role of competitive encounter complexes in paralogous phosphotransferase systems
M Strickland, S Kale, MP Strub, CD Schwieters, J Liu, A Peterkofsky, ...
Journal of molecular biology 431 (12), 2331-2342, 2019
122019
The CENP-A nucleosome: where and when it happens during the inner kinetochore’s assembly
S Kale, R Boopathi, E Belotti, IN Lone, M Graies, M Schröder, M Petrova, ...
Trends in Biochemical Sciences, 2023
72023
CENP-A nucleosome is a sensitive allosteric scaffold for DNA and chromatin factors
D Doğan, M Arslan, T Uluçay, S Kalyoncu, S Dimitrov, S Kale
Journal of molecular biology 433 (6), 166789, 2021
72021
Model of a kinetically driven crosstalk between paralogous protein encounter complexes
S Kale, M Strickland, A Peterkofsky, J Liu, N Tjandra
Biophysical journal 117 (9), 1655-1665, 2019
72019
Finding chemical reaction paths with a multilevel preconditioning protocol
S Kale, O Sode, J Weare, AR Dinner
Journal of chemical theory and computation 10 (12), 5467-5475, 2014
72014
Molecular mechanism of nucleosome recognition by the pioneer transcription factor Sox
B Ozden, R Boopathi, AB Barlas, IN Lone, J Bednar, C Petosa, S Kale, ...
Journal of Chemical Information and Modeling 63 (12), 3839-3853, 2023
52023
Nucleosome dyad determines the H1 C-terminus collapse on distinct DNA arms
JA Louro, R Boopathi, B Beinsteiner, AKM Patel, TC Cheng, D Angelov, ...
Structure 31 (2), 201-212. e5, 2023
42023
Engineering of conserved residues near antibody heavy chain complementary determining region 3 (HCDR3) improves both affinity and stability
M Arslan, T Uluçay, S Kale, S Kalyoncu
Biochimica et Biophysica Acta (BBA)-Proteins and Proteomics 1871 (4), 140915, 2023
22023
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