ALC1 links chromatin accessibility to PARP inhibitor response in homologous recombination-deficient cells P Verma, Y Zhou, Z Cao, PV Deraska, M Deb, E Arai, W Li, Y Shao, ... Nature cell biology 23 (2), 160-171, 2021 | 111 | 2021 |
Oncogenic notch promotes long-range regulatory interactions within hyperconnected 3D cliques J Petrovic, Y Zhou, M Fasolino, N Goldman, GW Schwartz, MR Mumbach, ... Molecular cell 73 (6), 1174-1190. e12, 2019 | 93 | 2019 |
AB cell regulome links notch to downstream oncogenic pathways in small B cell lymphomas RJH Ryan, J Petrovic, DM Rausch, Y Zhou, CA Lareau, MJ Kluk, ... Cell reports 21 (3), 784-797, 2017 | 75 | 2017 |
TooManyCells identifies and visualizes relationships of single-cell clades GW Schwartz, Y Zhou, J Petrovic, M Fasolino, L Xu, SM Shaffer, WS Pear, ... Nature methods 17 (4), 405-413, 2020 | 71 | 2020 |
Genetic variation in type 1 diabetes reconfigures the 3D chromatin organization of T cells and alters gene expression M Fasolino, N Goldman, W Wang, B Cattau, Y Zhou, J Petrovic, VM Link, ... Immunity 52 (2), 257-274. e11, 2020 | 50 | 2020 |
Functional proteogenomics reveals biomarkers and therapeutic targets in lymphomas DCM Rolland, V Basrur, YK Jeon, C McNeil-Schwalm, D Fermin, ... Proceedings of the National Academy of Sciences 114 (25), 6581-6586, 2017 | 45 | 2017 |
ZMYND8-regulated IRF8 transcription axis is an acute myeloid leukemia dependency Z Cao, KA Budinich, H Huang, D Ren, B Lu, Z Zhang, Q Chen, Y Zhou, ... Molecular cell 81 (17), 3604-3622. e10, 2021 | 42 | 2021 |
EBF1 nuclear repositioning instructs chromatin refolding to promote therapy resistance in T leukemic cells Y Zhou, J Petrovic, J Zhao, W Zhang, A Bigdeli, Z Zhang, SL Berger, ... Molecular cell 82 (5), 1003-1020. e15, 2022 | 19 | 2022 |
Classes of ITD predict outcomes in AML patients treated with FLT3 inhibitors GW Schwartz, B Manning, Y Zhou, P Velu, A Bigdeli, R Astles, ... Clinical Cancer Research 25 (2), 573-583, 2019 | 18 | 2019 |
Differential integration of transcriptome and proteome identifies pan-cancer prognostic biomarkers GW Schwartz, J Petrovic, Y Zhou, RB Faryabi Frontiers in genetics 9, 205, 2018 | 18 | 2018 |
TooManyPeaks identifies drug-resistant-specific regulatory elements from single-cell leukemic epigenomes GW Schwartz, Y Zhou, J Petrovic, WS Pear, RB Faryabi Cell reports 36 (8), 2021 | 8 | 2021 |