| Simulation of large-scale rule-based models J Colvin, MI Monine, JR Faeder, WS Hlavacek, DD Von Hoff, RG Posner Bioinformatics 25 (7), 910-917, 2009 | 77 | 2009 |
| RuleMonkey: software for stochastic simulation of rule-based models J Colvin, MI Monine, RN Gutenkunst, WS Hlavacek, DD Von Hoff, ... BMC bioinformatics 11, 1-14, 2010 | 74 | 2010 |
| Next-generation sequencing of Coccidioides immitis isolated during cluster investigation DM Engelthaler, T Chiller, JA Schupp, J Colvin, SM Beckstrom-Sternberg, ... Emerging infectious diseases 17 (2), 227, 2011 | 56 | 2011 |
| BioNetFit: a fitting tool compatible with BioNetGen, NFsim and distributed computing environments BR Thomas, LA Chylek, J Colvin, S Sirimulla, AHA Clayton, WS Hlavacek, ... Bioinformatics 32 (5), 798-800, 2016 | 41 | 2016 |
| PyBioNetFit and the biological property specification language ED Mitra, R Suderman, J Colvin, A Ionkov, A Hu, HM Sauro, RG Posner, ... IScience 19, 1012-1036, 2019 | 40 | 2019 |
| Implementation of a practical Markov chain Monte Carlo sampling algorithm in PyBioNetFit J Neumann, YT Lin, A Mallela, EF Miller, J Colvin, AT Duprat, Y Chen, ... Bioinformatics 38 (6), 1770-1772, 2022 | 7 | 2022 |
| PyBioNetFit and the biological property specification language. iScience. 2019; 19: 1012–1036 ED Mitra, R Suderman, J Colvin, A Ionkov, A Hu, HM Sauro, RG Posner, ... PyBioNetFit is a tool for model parameter estimation, uncertainty …, 0 | 7 | |
| Hardware implementation of a neural network pattern shaper algorithm EJ Brauer, JJ Abbas, B Callaway, J Colvin, J Farris IJCNN'99. International Joint Conference on Neural Networks. Proceedings …, 1999 | 4 | 1999 |
| A step-by-step guide to using BioNetFit WS Hlavacek, JA Csicsery-Ronay, LR Baker, MC Ramos Álamo, A Ionkov, ... Modeling Biomolecular Site Dynamics: Methods and Protocols, 391-419, 2019 | 3 | 2019 |
| Modeling Biomolecular Site Dynamics WS Hlavacek, J Csicsery-Ronay, LR Baker, MDCR Álamo, A Ionkov, ... | 1 | 2018 |
| Simulation of large-scale rule-based models WS Hlavacek, MI Monnie, J Colvin, J Faseder Bioinformatics 25 (LA-UR-08-04860; LA-UR-08-4860), 2008 | 1 | 2008 |
| Rejection-free stochastic simulation of BNGL-encoded models WS Hlavacek, MI Monine, J Colvin, RG Posner, DD Von Hoff BMC Bioniformatics, 2009 | | 2009 |
| Graphical user interface for functional neuromuscular stimulation system EJ Brauer, J Colvin, JJ Abbas 42nd Midwest Symposium on Circuits and Systems (Cat. No. 99CH36356) 2, 1105-1108, 1999 | | 1999 |
| SUPPLEMENTAL MATERIAL Simulation of large-scale rule-based models J Colvin, MI Monine, JR Faeder, WS Hlavacek, DD Von Hoff, RG Posner | | |
| Intended for: Bioinformatics BR Thomas, LA Chylek, J Colvin, S Sirimulla, AHA Clayton, WS Hlavacek, ... | | |
| Simulation of systems marked by combinatorial complexity M Monine, J Yang, A Nag, B Goldstein, RG Posner, J Colvin, ... | | |
| Modeling multivalent ligand-receptor interactions with constraints on configurations of cell-surface receptor aggregates MI Monine, J Yang, J Colvin, RG Posner, PB Savage, JR Faeder, ... | | |
