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| 4C-ker: a method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments R Raviram, PP Rocha, CL Müller, ER Miraldi, S Badri, Y Fu, E Swanzey, ... PLoS computational biology 12 (3), e1004780, 2016 | 92 | 2016 |
| Ultraconserved enhancer function does not require perfect sequence conservation V Snetkova, AR Ypsilanti, JA Akiyama, BJ Mannion, I Plajzer-Frick, ... Nature genetics 53 (4), 521-528, 2021 | 55 | 2021 |
| Identification of multi-loci hubs from 4C-seq demonstrates the functional importance of simultaneous interactions T Jiang, R Raviram, V Snetkova, PP Rocha, C Proudhon, S Badri, ... Nucleic acids research 44 (18), 8714-8725, 2016 | 52 | 2016 |
| Active and inactive enhancers cooperate to exert localized and long-range control of gene regulation C Proudhon, V Snetkova, R Raviram, C Lobry, S Badri, T Jiang, B Hao, ... Cell reports 15 (10), 2159-2169, 2016 | 51 | 2016 |
| miRNAs are essential for the regulation of the PI3K/AKT/FOXO pathway and receptor editing during B cell maturation M Coffre, D Benhamou, D Rieß, L Blumenberg, V Snetkova, MJ Hines, ... Cell reports 17 (9), 2271-2285, 2016 | 43 | 2016 |
| Enhancer talk V Snetkova, JA Skok Epigenomics 10 (4), 483-498, 2018 | 38 | 2018 |
| EpiMethylTag: simultaneous detection of ATAC-seq or ChIP-seq signals with DNA methylation P Lhoumaud, G Sethia, F Izzo, T Sakellaropoulos, V Snetkova, S Vidal, ... Genome biology 20, 1-12, 2019 | 32 | 2019 |
| Perfect and imperfect views of ultraconserved sequences V Snetkova, LA Pennacchio, A Visel, DE Dickel Nature Reviews Genetics 23 (3), 182-194, 2022 | 20 | 2022 |
| Widespread Increase in Enhancer—Promoter Interactions during Developmental Enhancer Activation in Mammals Z Chen, V Snetkova, G Bower, S Jacinto, B Clock, I Barozzi, BJ Mannion, ... BioRxiv, 2022.11. 18.516017, 2022 | 11 | 2022 |
| Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ... Nature 605 (7909), E3-E3, 2022 | 8 | 2022 |
| Context-dependent requirement of euchromatic histone methyltransferase activity during reprogramming to pluripotency SE Vidal, A Polyzos, K Chatterjee, L Ee, E Swanzey, J Morales-Valencia, ... Stem cell reports 15 (6), 1233-1245, 2020 | 8 | 2020 |
| Increased enhancer–promoter interactions during developmental enhancer activation in mammals Z Chen, V Snetkova, G Bower, S Jacinto, B Clock, A Dizehchi, I Barozzi, ... Nature Genetics, 1-11, 2024 | 4 | 2024 |
| Chromatin Folding and Recombination V Snetkova, JA Skok Nuclear Architecture and Dynamics 2, 475-492, 2017 | 1 | 2017 |
| Advancing the genetic engineering toolbox by combining AsCas12a knock-in mice with ultra-compact screening W Jin, Y Deng, JE La Marca, E Lelliott, S Diepstraten, V Snetkova, ... bioRxiv, 2024.05. 30.596755, 2024 | | 2024 |
| Perspectives on ENCODE NJ Addleman, J Adrian, UK Baymuradov, A Bhaskar, N Boley, L Cao, ... Nature 583 (7818), 693-698, 2020 | | 2020 |
| Enhancers Cooperate to Exert Localized and Long-Range Control of Gene Regulation in Lymphocyte Development V Snetkova New York University, 2017 | | 2017 |
