| Functional annotation of a full-length mouse cDNA collection General organizer Hayashizaki Y. yosihide@ gsc. riken. go. uk 1 2 44 b Nature 409 (6821), 685-690, 2001 | 889 | 2001 |
| The filling potential method: a method for estimating the free energy surface for protein− ligand docking Y Fukunishi, Y Mikami, H Nakamura The Journal of Physical Chemistry B 107 (47), 13201-13210, 2003 | 156 | 2003 |
| Protein–protein interaction panel using mouse full-length cDNAs H Suzuki, Y Fukunishi, I Kagawa, R Saito, H Oda, T Endo, S Kondo, ... Genome research 11 (10), 1758-1765, 2001 | 126 | 2001 |
| Similarities among receptor pockets and among compounds: analysis and application to in silico ligand screening Y Fukunishi, Y Mikami, H Nakamura Journal of Molecular Graphics and Modelling 24 (1), 34-45, 2005 | 109 | 2005 |
| Prediction of synthetic accessibility based on commercially available compound databases Y Fukunishi, T Kurosawa, Y Mikami, H Nakamura Journal of chemical information and modeling 54 (12), 3259-3267, 2014 | 94 | 2014 |
| Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases A Wallqvist, Y Fukunishi, LR Murphy, A Fadel, RM Levy Bioinformatics 16 (11), 988-1002, 2000 | 93 | 2000 |
| Dipped adcluster model for chemisorptions and catalytic reactions on a metal surface H Nakatsuji The Journal of chemical physics 87 (8), 4995-5001, 1987 | 82 | 1987 |
| Hydrophobic hydration analysis on amino acid solutions by the microwave dielectric method M Suzuki, J Shigematsu, Y Fukunishi, T Kodama The Journal of Physical Chemistry B 101 (19), 3839-3845, 1997 | 71 | 1997 |
| Prediction of ligand‐binding sites of proteins by molecular docking calculation for a random ligand library Y Fukunishi, H Nakamura Protein Science 20 (1), 95-106, 2011 | 67 | 2011 |
| A hybrid method of molecular dynamics and harmonic dynamics for docking of flexible ligand to flexible receptor R Tatsumi, Y Fukunishi, H Nakamura Journal of computational chemistry 25 (16), 1995-2005, 2004 | 66 | 2004 |
| Dipped adcluster model for chemisorptions and catalytic reactions on a metal surface: Image force correction and applications to Pd–O2 adclusters H Nakatsuji, H Nakai, Y Fukunishi The Journal of chemical physics 95 (1), 640-647, 1991 | 65 | 1991 |
| Molecular dynamics simulations accelerated by GPU for biological macromolecules with a non-Ewald scheme for electrostatic interactions T Mashimo, Y Fukunishi, N Kamiya, Y Takano, I Fukuda, H Nakamura Journal of chemical theory and computation 9 (12), 5599-5609, 2013 | 62 | 2013 |
| Classification of chemical compounds by protein− compound docking for use in designing a focused library Y Fukunishi, Y Mikami, K Takedomi, M Yamanouchi, H Shima, ... Journal of Medicinal Chemistry 49 (2), 523-533, 2006 | 55 | 2006 |
| Amino acid translation program for full-length cDNA sequences with frameshift errors Y FUKUNISHI, Y HAYASHIZAKI Physiological genomics 5 (2), 81-87, 2001 | 53 | 2001 |
| Structure-based drug screening and ligand-based drug screening with machine learning Y Fukunishi Combinatorial chemistry & high throughput screening 12 (4), 397-408, 2009 | 50 | 2009 |
| Multiple target screening method for robust and accurate in silico ligand screening Y Fukunishi, Y Mikami, S Kubota, H Nakamura Journal of Molecular Graphics and Modelling 25 (1), 61-70, 2006 | 48 | 2006 |
| Utilization of methyl proton resonances in cross-saturation measurement for determining the interfaces of large protein–protein complexes H Takahashi, M Miyazawa, Y Ina, Y Fukunishi, Y Mizukoshi, H Nakamura, ... Journal of biomolecular NMR 34, 167-177, 2006 | 45 | 2006 |
| Coupling of protein surface hydrophobicity change to ATP hydrolysis by myosin motor domain M Suzuki, J Shigematsu, Y Fukunishi, Y Harada, T Yanagida, T Kodama Biophysical journal 72 (1), 18-23, 1997 | 44 | 1997 |
| Noise reduction method for molecular interaction energy: application to in silico drug screening and in silico target protein screening Y Fukunishi, S Kubota, H Nakamura Journal of chemical information and modeling 46 (5), 2071-2084, 2006 | 43 | 2006 |
| Mutational analysis of block and facilitation of HERG current by a class III anti-arrhythmic agent, nifekalant Y Hosaka, M Iwata, N Kamiya, M Yamada, K Kinoshita, Y Fukunishi, ... Channels 1 (3), 198-208, 2007 | 42 | 2007 |
Nakamura Haruki大阪大学蛋白質研究所在 protein.osaka-u.ac.jp 的电子邮件经过验证
