| Protein actions: Principles and modeling K Dill, RL Jernigan, I Bahar Garland Science, 2017 | 82 | 2017 |
| The critical role of the loops of triosephosphate isomerase for its oligomerization, dynamics, and functionality AR Katebi, RL Jernigan Protein Science 23 (2), 213-228, 2014 | 49 | 2014 |
| A balanced secondary structure predictor MN Islam, S Iqbal, AR Katebi, MT Hoque Journal of theoretical biology 389, 60-71, 2016 | 41 | 2016 |
| The importance of slow motions for protein functional loops A Skliros, MT Zimmermann, D Chakraborty, S Saraswathi, AR Katebi, ... Physical biology 9 (1), 014001, 2012 | 33 | 2012 |
| Topological diversity of chromatin fibers: Interplay between nucleosome repeat length, DNA linking number and the level of transcription D Norouzi, A Katebi, F Cui, VB Zhurkin AIMS biophysics 2 (4), 613, 2015 | 28 | 2015 |
| The use of experimental structures to model protein dynamics AR Katebi, K Sankar, K Jia, RL Jernigan Molecular Modeling of Proteins, 213-236, 2015 | 20 | 2015 |
| NetAct: a computational platform to construct core transcription factor regulatory networks using gene activity K Su, A Katebi, V Kohar, B Clauss, D Gordin, ZS Qin, RKM Karuturi, S Li, ... Genome biology 23 (1), 270, 2022 | 18 | 2022 |
| Structural interpretation of protein-protein interaction network AR Katebi, A Kloczkowski, RL Jernigan BMC structural biology 10, 1-11, 2010 | 18 | 2010 |
| Discovery of functional motifs from the interface region of oligomeric proteins using frequent subgraph mining TK Saha, A Katebi, W Dhifli, M Al Hasan IEEE/ACM transactions on computational biology and bioinformatics 16 (5 …, 2017 | 15 | 2017 |
| Aldolases utilize different oligomeric states to preserve their functional dynamics AR Katebi, RL Jernigan Biochemistry 54 (22), 3543-3554, 2015 | 15 | 2015 |
| Computational systems‐biology approaches for modeling gene networks driving epithelial–mesenchymal transitions A Katebi, D Ramirez, M Lu Computational and systems oncology 1 (2), e1021, 2021 | 13 | 2021 |
| Random parametric perturbations of gene regulatory circuit uncover state transitions in cell cycle A Katebi, V Kohar, M Lu Iscience 23 (6), 2020 | 8 | 2020 |
| AGRN: accurate gene regulatory network inference using ensemble machine learning methods DM Alawad, A Katebi, MWU Kabir, MT Hoque Bioinformatics Advances 3 (1), vbad032, 2023 | 6 | 2023 |
| Immunological implications of a structural analysis of two different porcine IL1β proteins expressed in macrophages and embryos AR Katebi, P Gniewek, M Zimmermann, S Saraswathi, Z Gong, CK Tuggle, ... Proceedings of the First ACM International Conference on Bioinformatics and …, 2010 | 5 | 2010 |
| Gene Circuit Explorer (GeneEx): an interactive web-app for visualizing, simulating and analyzing gene regulatory circuits V Kohar, D Gordin, A Katebi, H Levine, JN Onuchic, M Lu Bioinformatics 37 (9), 1327-1329, 2021 | 2 | 2021 |
| Modeling a gene regulatory network of EMT hybrid states for mouse embryonic skin cells D Ramirez, V Kohar, A Katebi, M Lu bioRxiv, 799908, 2019 | 2 | 2019 |
| Data-driven modeling of core gene regulatory network underlying leukemogenesis in IDH mutant AML A Katebi, X Chen, D Ramirez, S Li, M Lu npj Systems Biology and Applications 10 (1), 38, 2024 | 1 | 2024 |
| Building and simulating protein machines AR Katebi Iowa State University, 2013 | 1 | 2013 |
| Computational testing of protein-protein interactions AR Katebi, A Kloczkowski, RL Jeringan 2009 IEEE International Conference on Bioinformatics and Biomedicine …, 2009 | 1 | 2009 |
| Supporting Snapshots in a Log-based File System AR Katebi University of Florida, 2004 | 1 | 2004 |
