Fiji: an open-source platform for biological-image analysis J Schindelin, I Arganda-Carreras, E Frise, V Kaynig, M Longair, T Pietzsch, ... Nature Methods 9 (7), 676-682, 2012 | 56099 | 2012 |
Globally optimal stitching of tiled 3D microscopic image acquisitions S Preibisch, S Saalfeld, P Tomancak Bioinformatics 25 (11), 1463-1465, 2009 | 2427 | 2009 |
TrakEM2 software for neural circuit reconstruction A Cardona, S Saalfeld, J Schindelin, I Arganda-Carreras, S Preibisch, ... PLoS One 7 (6), e38011, 2012 | 971 | 2012 |
A connectome and analysis of the adult Drosophila central brain LK Scheffer, CS Xu, M Januszewski, Z Lu, S Takemura, KJ Hayworth, ... Elife 9, e57443, 2020 | 940* | 2020 |
A complete electron microscopy volume of the brain of adult Drosophila melanogaster Z Zheng, JS Lauritzen, E Perlman, CG Robinson, M Nichols, D Milkie, ... Cell 174 (3), 730-743. e22, 2018 | 833 | 2018 |
Software for bead-based registration of selective plane illumination microscopy data S Preibisch, S Saalfeld, J Schindelin, P Tomancak Nature methods 7 (6), 418-419, 2010 | 446 | 2010 |
An Integrated Micro- and Macroarchitectural Analysis of the Drosophila Brain by Computer-Assisted Serial Section Electron Microscopy A Cardona, S Saalfeld, S Preibisch, B Schmid, A Cheng, J Pulokas, ... PLoS Biology 8 (10), e1000502, 2010 | 427 | 2010 |
CATMAID: collaborative annotation toolkit for massive amounts of image data S Saalfeld, A Cardona, V Hartenstein, P Tomančák Bioinformatics 25 (15), 1984-1986, 2009 | 377 | 2009 |
Cortical column and whole-brain imaging with molecular contrast and nanoscale resolution R Gao, SM Asano, S Upadhyayula, I Pisarev, DE Milkie, TL Liu, V Singh, ... Science 363 (6424), eaau8302, 2019 | 343 | 2019 |
Whole-brain serial-section electron microscopy in larval zebrafish DGC Hildebrand, M Cicconet, RM Torres, W Choi, TM Quan, J Moon, ... Nature 545 (7654), 345-349, 2017 | 321 | 2017 |
Elastic volume reconstruction from series of ultra-thin microscopy sections S Saalfeld, R Fetter, A Cardona, P Tomancak Nature Methods 9 (7), 717-720, 2012 | 320 | 2012 |
Quantitative neuroanatomy for connectomics in Drosophila CM Schneider-Mizell, S Gerhard, M Longair, T Kazimiers, F Li, MF Zwart, ... Elife 5, e12059, 2016 | 311 | 2016 |
BigDataViewer: visualization and processing for large image data sets T Pietzsch, S Saalfeld, S Preibisch, P Tomancak Nature Methods 12 (6), 481-483, 2015 | 294 | 2015 |
Large scale image segmentation with structured loss based deep learning for connectome reconstruction J Funke, F Tschopp, W Grisaitis, A Sheridan, C Singh, S Saalfeld, ... IEEE transactions on pattern analysis and machine intelligence 41 (7), 1669-1680, 2018 | 224* | 2018 |
Whole-cell organelle segmentation in volume electron microscopy L Heinrich, D Bennett, D Ackerman, W Park, J Bogovic, N Eckstein, ... Nature 599 (7883), 141-146, 2021 | 186* | 2021 |
ImgLib2—generic image processing in Java T Pietzsch, S Preibisch, P Tomančák, S Saalfeld Bioinformatics 28 (22), 3009–3011, 2012 | 155 | 2012 |
As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets S Saalfeld, A Cardona, V Hartenstein, P Tomančák Bioinformatics 26 (12), i57-i63, 2010 | 155 | 2010 |
Systematic imaging reveals features and changing localization of mRNAs in Drosophila development H Jambor, V Surendranath, AT Kalinka, P Mejstrik, S Saalfeld, ... eLife 4, e05003, 2015 | 143 | 2015 |
Robust registration of calcium images by learned contrast synthesis JA Bogovic, P Hanslovsky, A Wong, S Saalfeld 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI), 1123-1126, 2016 | 135 | 2016 |
Automatic detection of synaptic partners in a whole-brain Drosophila electron microscopy data set J Buhmann, A Sheridan, C Malin-Mayor, P Schlegel, S Gerhard, ... Nature Methods 18 (7), 771-774, 2021 | 111 | 2021 |