| Machine learning analysis of gene expression data reveals novel diagnostic and prognostic biomarkers and identifies therapeutic targets for soft tissue sarcomas DGP van IJzendoorn, K Szuhai, IH Briaire-de Bruijn, M Kostine, ML Kuijjer, ... PLoS computational biology 15 (2), e1006826, 2019 | 99 | 2019 |
| Fusion events lead to truncation of FOS in epithelioid hemangioma of bone DGP van IJzendoorn, D de Jong, C Romagosa, P Picci, MS Benassi, ... Genes, Chromosomes and Cancer 54 (9), 565-574, 2015 | 78 | 2015 |
| Telatinib is an effective targeted therapy for pseudomyogenic hemangioendothelioma DGP Van IJzendoorn, S Sleijfer, H Gelderblom, FALM Eskens, ... Clinical Cancer Research 24 (11), 2678-2687, 2018 | 45 | 2018 |
| Functional analyses of a human vascular tumor FOS variant identify a novel degradation mechanism and a link to tumorigenesis DGP van IJzendoorn, Z Forghany, F Liebelt, AC Vertegaal, ... Journal of Biological Chemistry 292 (52), 21282-21290, 2017 | 44 | 2017 |
| Molecular pathology of bone tumors SW Lam, DGP van IJzendoorn, AM Cleton-Jansen, K Szuhai, ... The Journal of Molecular Diagnostics 21 (2), 171-182, 2019 | 29 | 2019 |
| Vascular tumors of bone: the evolvement of a classification based on molecular developments DGP van IJzendoorn, JVMG Bovée Surgical Pathology Clinics 10 (3), 621-635, 2017 | 26 | 2017 |
| Analysis of 567,758 randomized controlled trials published over 30 years reveals trends in phrases used to discuss results that do not reach statistical significance WM Otte, CH Vinkers, PC Habets, DGP Van Ijzendoorn, JK Tijdink PLoS Biology 20 (2), e3001562, 2022 | 25 | 2022 |
| PyPanda: a Python package for gene regulatory network reconstruction DGP van IJzendoorn, K Glass, J Quackenbush, ML Kuijjer Bioinformatics 32 (21), 3363-3365, 2016 | 17 | 2016 |
| The Network Zoo: a multilingual package for the inference and analysis of gene regulatory networks M Ben Guebila, T Wang, CM Lopes-Ramos, V Fanfani, D Weighill, ... Genome Biology 24 (1), 45, 2023 | 12 | 2023 |
| Vascular tumor recapitulated in endothelial cells from hiPSCs engineered to express the SERPINE1-FOSB translocation DGP van IJzendoorn, DCF Salvatori, X Cao, F van den Hil, ... Cell Reports Medicine 1 (9), 2020 | 12 | 2020 |
| Spatially segregated macrophage populations predict distinct outcomes in colon cancer M Matusiak, JW Hickey, DGP van IJzendoorn, G Lu, L Kidziński, S Zhu, ... Cancer Discovery, OF1-OF22, 2024 | 7 | 2024 |
| Interactions in CSF1-driven tenosynovial giant cell tumors DGP van IJzendoorn, M Matusiak, GW Charville, G Spierenburg, S Varma, ... Clinical Cancer Research 28 (22), 4934-4946, 2022 | 6 | 2022 |
| Psammomatoid ossifying fibroma is defined by SATB2 rearrangement AHG Cleven, K Szuhai, DGP van IJzendoorn, E Groen, H Baelde, ... Modern Pathology 36 (1), 100013, 2023 | 4 | 2023 |
| Almost significant: trends and P values in the use of phrases describing marginally significant results in 567,758 randomized controlled trials published between 1990 and 2020 WM Otte, CH Vinkers, P Habets, DGP van IJzendoorn, JK Tijdink medRxiv, 2021.03. 01.21252701, 2021 | 4 | 2021 |
| Development and validation of a machine-learning algorithm to predict the relevance of scientific articles within the field of teratology PC Habets, DGP van IJzendoorn, CH Vinkers, L Härmark, LC de Vries, ... Reproductive Toxicology 113, 150-154, 2022 | 3 | 2022 |
| Identification of stable housekeeping genes for induced pluripotent stem cells and-derived endothelial cells for drug testing SLM Ong, HJ Baelde, DGP van IJzendoorn, JVMG Bovée, K Szuhai Scientific Reports 12 (1), 16160, 2022 | 3 | 2022 |
| Sarcoma microenvironment cell states and ecosystems are associated with prognosis and predict response to immunotherapy A Subramanian, N Nemat-Gorgani, TJ Ellis-Caleo, DGP van IJzendoorn, ... Nature cancer 5 (4), 642-658, 2024 | 2 | 2024 |
| Juvenile psammomatoid ossifying fibroma is defined by SATB2 rearrangement A Cleven, K Szuhai, D van IJzendoorn, E Groen, H Baelde, P Schreuder, ... LABORATORY INVESTIGATION 102 (SUPPL 1), 866-866, 2022 | 2 | 2022 |
| Identification and validation of sarcoma cellular ecosystems associated with prognosis and predictive of immunotherapy response A Subramanian, N Nemat-Gorgani, TJ Ellis-Caleo, DGP van IJzendoorn, ... Cancer Research 83 (7_Supplement), 5960-5960, 2023 | 1 | 2023 |
| Clinical study type classification, validation, and PubMed filter comparison with natural language processing and active learning DGP van IJzendoorn, PC Habets, CH Vinkers, WM Otte medRxiv, 2022.11. 01.22281685, 2022 | 1 | 2022 |
