VDJtools: unifying post-analysis of T cell receptor repertoires M Shugay, DV Bagaev, MA Turchaninova, DA Bolotin, OV Britanova, ... PLoS computational biology 11 (11), e1004503, 2015 | 583 | 2015 |
tcR: an R package for T cell receptor repertoire advanced data analysis VI Nazarov, MV Pogorelyy, EA Komech, IV Zvyagin, DA Bolotin, M Shugay, ... BMC bioinformatics 16, 1-5, 2015 | 253 | 2015 |
SARS-CoV-2 mRNA vaccination elicits a robust and persistent T follicular helper cell response in humans PA Mudd, AA Minervina, MV Pogorelyy, JS Turner, W Kim, E Kalaidina, ... Cell 185 (4), 603-613. e15, 2022 | 229 | 2022 |
SARS-CoV-2 antigen exposure history shapes phenotypes and specificity of memory CD8+ T cells AA Minervina, MV Pogorelyy, AM Kirk, JC Crawford, EK Allen, CH Chou, ... Nature immunology 23 (5), 781-790, 2022 | 164* | 2022 |
Dynamics of individual T cell repertoires: from cord blood to centenarians OV Britanova, M Shugay, EM Merzlyak, DB Staroverov, EV Putintseva, ... The Journal of Immunology 196 (12), 5005-5013, 2016 | 156 | 2016 |
Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing IV Zvyagin, MV Pogorelyy, ME Ivanova, EA Komech, M Shugay, ... Proceedings of the National Academy of Sciences 111 (16), 5980-5985, 2014 | 131 | 2014 |
Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection AA Minervina, EA Komech, A Titov, M Bensouda Koraichi, E Rosati, ... Elife 10, e63502, 2021 | 124 | 2021 |
Detecting T cell receptors involved in immune responses from single repertoire snapshots MV Pogorelyy, AA Minervina, M Shugay, DM Chudakov, YB Lebedev, ... PLoS Biology 17 (6), e3000314, 2019 | 119 | 2019 |
Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins MV Pogorelyy, AA Minervina, MP Touzel, AL Sycheva, EA Komech, ... Proceedings of the National Academy of Sciences 115 (50), 12704-12709, 2018 | 100 | 2018 |
The changing landscape of naive T cell receptor repertoire with human aging ES Egorov, SA Kasatskaya, VN Zubov, M Izraelson, TO Nakonechnaya, ... Frontiers in Immunology 9, 1618, 2018 | 100 | 2018 |
Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires MV Pogorelyy, Y Elhanati, Q Marcou, AL Sycheva, EA Komech, ... PLoS computational biology 13 (7), e1005572, 2017 | 100 | 2017 |
VDJdb in the pandemic era: a compendium of T cell receptors specific for SARS-CoV-2 M Goncharov, D Bagaev, D Shcherbinin, I Zvyagin, D Bolotin, PG Thomas, ... Nature methods 19 (9), 1017-1019, 2022 | 88 | 2022 |
The evidence for increased L1 activity in the site of human adult brain neurogenesis AA Kurnosov, SV Ustyugova, VI Nazarov, AA Minervina, AY Komkov, ... PLoS One 10 (2), e0117854, 2015 | 62 | 2015 |
Method for identification of condition-associated public antigen receptor sequences MV Pogorelyy, AA Minervina, DM Chudakov, IZ Mamedov, YB Lebedev, ... Elife 7, e33050, 2018 | 59 | 2018 |
T‐cell receptor and B‐cell receptor repertoire profiling in adaptive immunity A Minervina, M Pogorelyy, I Mamedov Transplant International 32 (11), 1111-1123, 2019 | 58 | 2019 |
Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones AA Minervina, MV Pogorelyy, EA Komech, VK Karnaukhov, P Bacher, ... Elife 9, e53704, 2020 | 57 | 2020 |
CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients EA Komech, MV Pogorelyy, ES Egorov, OV Britanova, DV Rebrikov, ... Rheumatology 57 (6), 1097-1104, 2018 | 54 | 2018 |
Huge overlap of individual TCR beta repertoires M Shugay, DA Bolotin, EV Putintseva, MV Pogorelyy, IZ Mamedov, ... Frontiers in immunology 4, 466, 2013 | 53 | 2013 |
Mother and child T cell receptor repertoires: deep profiling study EV Putintseva, OV Britanova, DB Staroverov, EM Merzlyak, ... Frontiers in immunology 4, 463, 2013 | 52 | 2013 |
Exploring the pre-immune landscape of antigen-specific T cells MV Pogorelyy, AD Fedorova, JE McLaren, K Ladell, DV Bagaev, ... Genome Medicine 10 (1), 1-14, 2018 | 45 | 2018 |