Integrative single-cell RNA-seq and ATAC-seq analysis of human developmental hematopoiesis AM Ranzoni, A Tangherloni, I Berest, SG Riva, B Myers, PM Strzelecka, ... Cell stem cell 28 (3), 472-487. e7, 2021 | 246 | 2021 |
Quantification of differential transcription factor activity and multiomics-based classification into activators and repressors: diffTF I Berest, C Arnold, A Reyes-Palomares, G Palla, KD Rasmussen, H Giles, ... Cell reports 29 (10), 3147-3159. e12, 2019 | 109 | 2019 |
Expression of galectin-1 in malignant tumors D Demydenko, I Berest Experimental oncology, 2009 | 99 | 2009 |
TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells KD Rasmussen, I Berest, S Keβler, K Nishimura, L Simón-Carrasco, ... Genome research 29 (4), 564-575, 2019 | 80 | 2019 |
Remodeling of active endothelial enhancers is associated with aberrant gene-regulatory networks in pulmonary arterial hypertension A Reyes-Palomares, M Gu, F Grubert, I Berest, S Sa, M Kasowski, ... Nature communications 11 (1), 1673, 2020 | 64 | 2020 |
Drug‐microenvironment perturbations reveal resistance mechanisms and prognostic subgroups in CLL PM Bruch, HAR Giles, C Kolb, SA Herbst, T Becirovic, T Roider, J Lu, ... Molecular Systems Biology 18 (8), e10855, 2022 | 11 | 2022 |
Integration of scATAC-Seq with scRNA-Seq data I Berest, A Tangherloni Single Cell Transcriptomics: Methods and Protocols, 293-310, 2022 | 6 | 2022 |
Enhancer-priming in ageing human bone marrow mesenchymal stromal cells contributes to immune traits MC Lai, M Ruiz-Velasco, C Arnold, O Sigalova, D Bunina, I Berest, X Ding, ... BioRxiv, 2021.09. 03.458728, 2021 | 5 | 2021 |
Tuft cell IL-17RB restrains IL-25 bioavailability and reveals context-dependent ILC2 hypoproliferation X Feng, T Andersson, J Gschwend, P Flüchter, I Berest, JL Muff, ... bioRxiv, 2024.03. 04.583299, 2024 | | 2024 |
A computational multiomics method for quantifying activity and regulatory mode of transcription factors and its application in leukemia I Berest | | 2020 |