| GEMDOCK: a generic evolutionary method for molecular docking JM Yang, CC Chen Proteins: Structure, Function, and Bioinformatics 55 (2), 288-304, 2004 | 769 | 2004 |
| iGEMDOCK: a graphical environment of enhancing GEMDOCK using pharmacological interactions and post-screening analysis KC Hsu, YF Chen, SR Lin, JM Yang BMC bioinformatics 12, 1-11, 2011 | 540 | 2011 |
| Consensus scoring criteria for improving enrichment in virtual screening JM Yang, YF Chen, TW Shen, BS Kristal, DF Hsu Journal of chemical information and modeling 45 (4), 1134-1146, 2005 | 296 | 2005 |
| The cAMP receptor-like protein CLP is a novel c-di-GMP receptor linking cell–cell signaling to virulence gene expression in Xanthomonas campestris KH Chin, YC Lee, ZL Tu, CH Chen, YH Tseng, JM Yang, RP Ryan, ... Journal of molecular biology 396 (3), 646-662, 2010 | 248 | 2010 |
| An evolutionary algorithm for large traveling salesman problems HK Tsai, JM Yang, YF Tsai, CY Kao IEEE Transactions on Systems, Man, and Cybernetics, Part B (Cybernetics) 34 …, 2004 | 194 | 2004 |
| 2 : protein structure prediction server CC Chen, JK Hwang, JM Yang Nucleic acids research 34 (suppl_2), W152-W157, 2006 | 164 | 2006 |
| Protein structure database search and evolutionary classification JM Yang, CH Tung Nucleic acids research 34 (13), 3646-3659, 2006 | 155 | 2006 |
| Applying family competition to evolution strategies for constrained optimization JM Yang, YP Chen, JT Horng, CY Kao Evolutionary Programming VI: 6th International Conference, EP97 Indianapolis …, 1997 | 139 | 1997 |
| 2-v2: template-based protein structure prediction server CC Chen, JK Hwang, JM Yang Bmc Bioinformatics 10, 1-13, 2009 | 130 | 2009 |
| A pharmacophore‐based evolutionary approach for screening selective estrogen receptor modulators JM Yang, TW Shen Proteins: Structure, Function, and Bioinformatics 59 (2), 205-220, 2005 | 129 | 2005 |
| Combinatorial computational approaches to identify tetracycline derivatives as flavivirus inhibitors JM Yang, YF Chen, YY Tu, KR Yen, YL Yang PLoS One 2 (5), e428, 2007 | 128 | 2007 |
| Kappa-alpha plot derived structural alphabet and BLOSUM-like substitution matrix for rapid search of protein structure database CH Tung, JW Huang, JM Yang Genome biology 8, 1-16, 2007 | 127 | 2007 |
| Aurintricarboxylic acid inhibits influenza virus neuraminidase HC Hung, CP Tseng, JM Yang, YW Ju, SN Tseng, YF Chen, YS Chao, ... Antiviral Research 81 (2), 123-131, 2009 | 116 | 2009 |
| Crystal structure of a secondary vitamin D3 binding site of milk β‐lactoglobulin MC Yang, HH Guan, MY Liu, YH Lin, JM Yang, WL Chen, CJ Chen, ... Proteins: Structure, function, and bioinformatics 71 (3), 1197-1210, 2008 | 115 | 2008 |
| PhosphoPOINT: a comprehensive human kinase interactome and phospho-protein database CY Yang, CH Chang, YL Yu, TCE Lin, SA Lee, CC Yen, JM Yang, JM Lai, ... Bioinformatics 24 (16), i14-i20, 2008 | 111 | 2008 |
| KDM4B as a target for prostate cancer: structural analysis and selective inhibition by a novel inhibitor CH Chu, LY Wang, KC Hsu, CC Chen, HH Cheng, SM Wang, CM Wu, ... Journal of medicinal chemistry 57 (14), 5975-5985, 2014 | 106 | 2014 |
| Development and evaluation of a generic evolutionary method for protein–ligand docking JM Yang Journal of Computational Chemistry 25 (6), 843-857, 2004 | 102 | 2004 |
| Membrane protein-regulated networks across human cancers CY Lin, CH Lee, YH Chuang, JY Lee, YY Chiu, YH Wu Lee, YJ Jong, ... Nature communications 10 (1), 3131, 2019 | 91 | 2019 |
| Relationship between protein structures and disulfide‐bonding patterns CC Chuang, CY Chen, JM Yang, PC Lyu, JK Hwang Proteins: Structure, Function, and Bioinformatics: Structure, Function, and …, 2003 | 87 | 2003 |
| A robust evolutionary algorithm for training neural networks JM Yang, CY Kao Neural Computing & Applications 10, 214-230, 2001 | 71 | 2001 |
