| Designing template-free predictor for targeting protein-ligand binding sites with classifier ensemble and spatial clustering DJ Yu, J Hu, J Yang, HB Shen, J Tang, JY Yang IEEE/ACM transactions on computational biology and bioinformatics 10 (4 …, 2013 | 127 | 2013 |
| High-accuracy prediction of transmembrane inter-helix contacts and application to GPCR 3D structure modeling J Yang, R Jang, Y Zhang, HB Shen Bioinformatics 29 (20), 2579-2587, 2013 | 61 | 2013 |
| Accurate disulfide-bonding network predictions improve ab initio structure prediction of cysteine-rich proteins J Yang, BJ He, R Jang, Y Zhang, HB Shen Bioinformatics 31 (23), 3773-3781, 2015 | 44 | 2015 |
| Feature generation and hypothesis verification for reliable face anti-spoofing S Liu, S Lu, H Xu, J Yang, S Ding, L Ma Proceedings of the AAAI Conference on Artificial Intelligence 36 (2), 1782-1791, 2022 | 41 | 2022 |
| MemBrain: an easy-to-use online webserver for transmembrane protein structure prediction X Yin, J Yang, F Xiao, Y Yang, HB Shen Nano-Micro Letters 10 (1), 1-8, 2018 | 39 | 2018 |
| R2C: improving ab initio residue contact map prediction using dynamic fusion strategy and Gaussian noise filter J Yang, QY Jin, B Zhang, HB Shen Bioinformatics 32 (16), 2435-2443, 2016 | 34 | 2016 |
| Topology prediction improvement of α-helical transmembrane proteins through helix-tail modeling and multiscale deep learning fusion SH Feng, WX Zhang, J Yang, Y Yang, HB Shen Journal of Molecular Biology 432 (4), 1279-1296, 2020 | 29 | 2020 |
| MemBrain-contact 2.0: a new two-stage machine learning model for the prediction enhancement of transmembrane protein residue contacts in the full chain J Yang, HB Shen Bioinformatics 34 (2), 230-238, 2018 | 17 | 2018 |
| An exhaustive search algorithm to aid NMR-based structure determination of rotationally symmetric transmembrane oligomers J Yang, A Piai, HB Shen, JJ Chou Scientific Reports 7 (1), 17373, 2017 | 7 | 2017 |
