| Mapping the evolution of hypervirulent Klebsiella pneumoniae C Struve, CC Roe, M Stegger, SG Stahlhut, DS Hansen, DM Engelthaler, ... MBio 6 (4), 10.1128/mbio. 00630-15, 2015 | 322 | 2015 |
| NASP: an accurate, rapid method for the identification of SNPs in WGS datasets that supports flexible input and output formats JW Sahl, D Lemmer, J Travis, JM Schupp, JD Gillece, M Aziz, EM Driebe, ... Microbial genomics 2 (8), e000074, 2016 | 234 | 2016 |
| Genomic Analysis of the Emergence and Rapid Global Dissemination of the Clonal Group 258 Klebsiella pneumoniae Pandemic JR Bowers, B Kitchel, EM Driebe, DR MacCannell, C Roe, D Lemmer, ... PloS one 10 (7), e0133727, 2015 | 232 | 2015 |
| Valley Fever: Finding New Places for an Old Disease: Coccidioides immitis Found in Washington State Soil Associated With Recent Human Infection AP Litvintseva, N Marsden-Haug, S Hurst, H Hill, L Gade, EM Driebe, ... Clinical Infectious Diseases 60 (1), e1-e3, 2015 | 183 | 2015 |
| Comparative analysis of subtyping methods against a whole-genome-sequencing standard for Salmonella enterica serotype Enteritidis X Deng, N Shariat, EM Driebe, CC Roe, B Tolar, E Trees, P Keim, ... Journal of clinical microbiology 53 (1), 212-218, 2015 | 136 | 2015 |
| Update on the epidemiology of coccidioidomycosis in the United States OZ McCotter, K Benedict, DM Engelthaler, K Komatsu, KD Lucas, ... Medical mycology 57 (Supplement_1), S30-S40, 2019 | 133 | 2019 |
| Cryptococcus gattii in North American Pacific Northwest: whole-population genome analysis provides insights into species evolution and dispersal DM Engelthaler, ND Hicks, JD Gillece, CC Roe, JM Schupp, EM Driebe, ... MBio 5 (4), 10.1128/mbio. 01464-14, 2014 | 132 | 2014 |
| Zoonotic source attribution of Salmonella enterica serotype Typhimurium using genomic surveillance data, United States S Zhang, S Li, W Gu, H den Bakker, D Boxrud, A Taylor, C Roe, E Driebe, ... Emerging Infectious Diseases 25 (1), 82, 2019 | 85 | 2019 |
| Diversity, Virulence, and Antimicrobial Resistance in Isolates From the Newly Emerging Klebsiella pneumoniae ST101 Lineage CC Roe, AJ Vazquez, EP Esposito, R Zarrilli, JW Sahl Frontiers in microbiology 10, 542, 2019 | 78 | 2019 |
| Local Population Structure and Patterns of Western Hemisphere Dispersal for Coccidioides spp., the Fungal Cause of Valley Fever DM Engelthaler, CC Roe, CM Hepp, M Teixeira, EM Driebe, JM Schupp, ... MBio 7 (2), 10.1128/mbio. 00550-16, 2016 | 74 | 2016 |
| Using Whole Genome Analysis to Examine Recombination across Diverse Sequence Types of Staphylococcus aureus EM Driebe, JW Sahl, C Roe, JR Bowers, JM Schupp, JD Gillece, E Kelley, ... PLoS One 10 (7), e0130955, 2015 | 59 | 2015 |
| MLST and Whole-Genome-Based Population Analysis of Cryptococcus gattii VGIII Links Clinical, Veterinary and Environmental Strains, and Reveals Divergent … C Firacative, CC Roe, R Malik, K Ferreira-Paim, P Escandón, JE Sykes, ... PLoS Neglected Tropical Diseases 10 (8), e0004861, 2016 | 58 | 2016 |
| Whole-genome analysis of Exserohilum rostratum from an outbreak of fungal meningitis and other infections AP Litvintseva, S Hurst, L Gade, MA Frace, R Hilsabeck, JM Schupp, ... Journal of clinical microbiology 52 (9), 3216-3222, 2014 | 55 | 2014 |
| Coccidioides immitis identified in soil outside of its known range—Washington, 2013 N Marsden-Haug, H Hill, AP Litvintseva, DM Engelthaler, EM Driebe, ... Morbidity and Mortality Weekly Report 63 (20), 450, 2014 | 49 | 2014 |
| Whole-genome sequencing to determine origin of multinational outbreak of Sarocladium kiliense bloodstream infections KA Etienne, CC Roe, RM Smith, S Vallabhaneni, C Duarte, P Escandón, ... Emerging infectious diseases 22 (3), 476, 2016 | 46 | 2016 |
| Improved subtyping of Staphylococcus aureus clonal complex 8 strains based on whole-genome phylogenetic analysis JR Bowers, EM Driebe, V Albrecht, LK McDougal, M Granade, CC Roe, ... Msphere 3 (3), 10.1128/msphere. 00464-17, 2018 | 43* | 2018 |
| Transmission of methicillin-resistant Staphylococcus aureus infection through solid organ transplantation: confirmation via whole genome sequencing JM Wendt, D Kaul, BM Limbago, M Ramesh, S Cohle, AM Denison, ... American journal of transplantation 14 (11), 2633-2639, 2014 | 41 | 2014 |
| Burkholderia pseudomallei, the causative agent of melioidosis, is rare but ecologically established and widely dispersed in the environment in Puerto Rico CM Hall, S Jaramillo, R Jimenez, NE Stone, H Centner, JD Busch, ... PLoS neglected tropical diseases 13 (9), e0007727, 2019 | 38 | 2019 |
| Genome sequence of Staphylococcus aureus strain CA-347, a USA600 methicillin-resistant isolate M Stegger, EM Driebe, C Roe, D Lemmer, JR Bowers, DM Engelthaler, ... Genome announcements 1 (4), 10.1128/genomea. 00517-13, 2013 | 34 | 2013 |
| The Northern Arizona SNP Pipeline (NASP): accurate, flexible, and rapid identification of SNPs in WGS datasets JW Sahl, D Lemmer, J Travis, JM Schupp, JD Gillece, M Aziz, EM Driebe, ... bioRxiv, 037267, 2016 | 30 | 2016 |
