Evolution and diversity in human herpes simplex virus genomes ML Szpara, D Gatherer, A Ochoa, B Greenbaum, A Dolan, RJ Bowden, ... Journal of virology 88 (2), 1209-1227, 2014 | 223 | 2014 |
Proteome-wide analysis reveals widespread lysine acetylation of major protein complexes in the malaria parasite SA Cobbold, JM Santos, A Ochoa, DH Perlman, M Llinás Scientific reports 6 (1), 19722, 2016 | 83 | 2016 |
Estimating FST and kinship for arbitrary population structures A Ochoa, JD Storey PLoS genetics 17 (1), e1009241, 2021 | 71* | 2021 |
Using context to improve protein domain identification A Ochoa, M Llinás, M Singh BMC bioinformatics 12, 1-14, 2011 | 38 | 2011 |
Computing van der Waals energies in the context of the rotamer approximation G Grigoryan, A Ochoa, AE Keating Proteins: Structure, Function, and Bioinformatics 68 (4), 863-878, 2007 | 34 | 2007 |
Beyond the E-Value: Stratified Statistics for Protein Domain Prediction A Ochoa, JD Storey, M Llinás, M Singh PLoS computational biology 11 (11), e1004509, 2015 | 28 | 2015 |
FST and kinship for arbitrary population structures I: Generalized definitions A Ochoa, JD Storey bioRxiv, 083915, 2016 | 17 | 2016 |
Correcting signal biases and detecting regulatory elements in STARR-seq data YS Kim, GD Johnson, J Seo, A Barrera, TN Cowart, WH Majoros, A Ochoa, ... Genome research 31 (5), 877-889, 2021 | 16 | 2021 |
Steroid-sensitive nephrotic syndrome candidate gene CLVS1 regulates podocyte oxidative stress and endocytosis BM Lane, M Chryst-Stangl, G Wu, M Shalaby, S El Desoky, CC Middleton, ... JCI insight 7 (2), 2022 | 15 | 2022 |
Limitations of principal components in quantitative genetic association models for human studies Y Yao, A Ochoa Elife 12, e79238, 2023 | 13 | 2023 |
New kinship and FST estimates reveal higher levels of differentiation in the global human population A Ochoa, JD Storey bioRxiv, 653279, 2019 | 11 | 2019 |
Domain prediction with probabilistic directional context A Ochoa, M Singh Bioinformatics 33 (16), 2471-2478, 2017 | 8 | 2017 |
HLA loci and recurrence of focal segmental glomerulosclerosis in pediatric kidney transplantation BI Shaw, A Ochoa, C Chan, C Nobuhara, R Gbadegesin, AM Jackson, ... Transplantation direct 7 (10), e748, 2021 | 4 | 2021 |
Genetic association models are robust to common population kinship estimation biases Z Hou, A Ochoa Genetics, iyad030, 2023 | 3 | 2023 |
Testing the effectiveness of principal components in adjusting for relatedness in genetic association studies Y Yao, A Ochoa bioRxiv, 858399, 2019 | 3 | 2019 |
Genetic risk variants for childhood nephrotic syndrome and corticosteroid response RK Cason, E Chambers, T Tu, M Chryst-Stangl, K Huggins, BM Lane, ... Frontiers in Pediatrics 11, 1248733, 2023 | | 2023 |
Variant Load in Childhood Nephrotic Syndrome Is Associated With Pattern of Therapy Response: SA-PO628 RK Cason, M Chryst-Stangl, K Huggins, BM Lane, T Tu, A Ochoa, ... Journal of the American Society of Nephrology 33 (11S), 777, 2022 | | 2022 |
Hla Antigens and Recurrence of Focal Segmental Glomerulosclerosis in Pediatric Kidney Transplantation BI Shaw, A Ochoa, C Chan, RA Gbadegesin, AM Jackson, ET Chambers AMERICAN JOURNAL OF TRANSPLANTATION 21, 321-322, 2021 | | 2021 |
T73GENOME-WIDE ASSOCIATION STUDY FOR PSYCHIATRIC RESPONSE TO ANTI-PSYCHOTIC TREATMENT S Gottipati, A Ochoa, B Ramaswamy, M Belete, J Storey European Neuropsychopharmacology 29, S254, 2019 | | 2019 |
Simulate Admixed Populations with bnpsd A Ochoa, JD Storey | | 2019 |