Approximate Bayesian computation scheme for parameter inference and model selection in dynamical systems T Toni, D Welch, N Strelkowa, A Ipsen, MPH Stumpf Journal of the Royal Society Interface 6 (31), 187-202, 2009 | 1774 | 2009 |
Evolution of pathogenicity and sexual reproduction in eight Candida genomes G Butler, MD Rasmussen, MF Lin, MAS Santos, S Sakthikumar, CA Munro, ... Nature 459 (7247), 657-662, 2009 | 1195 | 2009 |
Estimating the size of the human interactome MPH Stumpf, T Thorne, E De Silva, R Stewart, HJ An, M Lappe, C Wiuf Proceedings of the National Academy of Sciences 105 (19), 6959-6964, 2008 | 996 | 2008 |
Critical truths about power laws MPH Stumpf, MA Porter Science 335 (6069), 665-666, 2012 | 728 | 2012 |
Subnets of scale-free networks are not scale-free: sampling properties of networks MPH Stumpf, C Wiuf, RM May Proceedings of the National Academy of Sciences 102 (12), 4221-4224, 2005 | 719 | 2005 |
Gene regulatory network inference from single-cell data using multivariate information measures TE Chan, MPH Stumpf, AC Babtie Cell systems 5 (3), 251-267. e3, 2017 | 495 | 2017 |
Balancing selection at the prion protein gene consistent with prehistoric kurulike epidemics S Mead, MPH Stumpf, J Whitfield, JA Beck, M Poulter, T Campbell, ... Science 300 (5619), 640-643, 2003 | 483 | 2003 |
A large fraction of HLA class I ligands are proteasome-generated spliced peptides J Liepe, F Marino, J Sidney, A Jeko, DE Bunting, A Sette, PM Kloetzel, ... Science 354 (6310), 354-358, 2016 | 466 | 2016 |
Network motifs: structure does not determine function PJ Ingram, MPH Stumpf, J Stark BMC genomics 7, 1-12, 2006 | 353 | 2006 |
Simulation-based model selection for dynamical systems in systems and population biology T Toni, MPH Stumpf Bioinformatics 26 (1), 104-110, 2010 | 332 | 2010 |
Estimating recombination rates from population-genetic data MPH Stumpf, GAT McVean Nature Reviews Genetics 4 (12), 959-968, 2003 | 285 | 2003 |
AY chromosome census of the British Isles C Capelli, N Redhead, JK Abernethy, F Gratrix, JF Wilson, T Moen, ... Current Biology 13 (11), 979-984, 2003 | 259 | 2003 |
A predominantly indigenous paternal heritage for the Austronesian-speaking peoples of insular Southeast Asia and Oceania C Capelli, JF Wilson, M Richards, MPH Stumpf, F Gratrix, S Oppenheimer, ... The American Journal of Human Genetics 68 (2), 432-443, 2001 | 259 | 2001 |
Managing membrane stress: the phage shock protein (Psp) response, from molecular mechanisms to physiology N Joly, C Engl, G Jovanovic, M Huvet, T Toni, X Sheng, MPH Stumpf, ... FEMS microbiology reviews 34 (5), 797-827, 2010 | 250 | 2010 |
A framework for parameter estimation and model selection from experimental data in systems biology using approximate Bayesian computation J Liepe, P Kirk, S Filippi, T Toni, CP Barnes, MPH Stumpf Nature protocols 9 (2), 439-456, 2014 | 249 | 2014 |
Phylogenetic diversity of stress signalling pathways in fungi E Nikolaou, I Agrafioti, M Stumpf, J Quinn, I Stansfield, AJP Brown BMC Evolutionary Biology 9, 1-18, 2009 | 238 | 2009 |
Sensitivity, robustness, and identifiability in stochastic chemical kinetics models M Komorowski, MJ Costa, DA Rand, MPH Stumpf Proceedings of the National Academy of Sciences 108 (21), 8645-8650, 2011 | 237 | 2011 |
Statistical inference of the time-varying structure of gene-regulation networks S Lebre, J Becq, F Devaux, MPH Stumpf, G Lelandais BMC systems biology 4, 1-16, 2010 | 220 | 2010 |
Maximizing the information content of experiments in systems biology J Liepe, S Filippi, M Komorowski, MPH Stumpf PLoS computational biology 9 (1), e1002888, 2013 | 219 | 2013 |
Gene Expression Profiles of Blumeria graminis Indicate Dynamic Changes to Primary Metabolism during Development of an Obligate Biotrophic Pathogen M Both, M Csukai, MPH Stumpf, PD Spanu The Plant Cell 17 (7), 2107-2122, 2005 | 186 | 2005 |