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Simon Cawley
Simon Cawley
Inscripta
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标题
引用次数
引用次数
年份
Initial sequencing and comparative analysis of the mouse genome
AT Chinwalla, LL Cook, KD Delehaunty, GA Fewell, LA Fulton, RS Fulton, ...
Nature 420 (6915), 520-563, 2002
8765*2002
The genome sequence of Drosophila melanogaster
MD Adams, SE Celniker, RA Holt, CA Evans, JD Gocayne, ...
Science 287 (5461), 2185-2195, 2000
83412000
An integrated semiconductor device enabling non-optical genome sequencing
JM Rothberg, W Hinz, TM Rearick, J Schultz, W Mileski, M Davey, ...
Nature 475 (7356), 348-352, 2011
30492011
Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs
S Cawley, S Bekiranov, HH Ng, P Kapranov, EA Sekinger, D Kampa, ...
Cell 116 (4), 499-509, 2004
14422004
Integrated detection and population-genetic analysis of SNPs and copy number variation
SA McCarroll, FG Kuruvilla, JM Korn, S Cawley, J Nemesh, A Wysoker, ...
Nature genetics 40 (10), 1166-1174, 2008
11642008
Large-scale transcriptional activity in chromosomes 21 and 22
P Kapranov, SE Cawley, J Drenkow, S Bekiranov, RL Strausberg, ...
Science 296 (5569), 916-919, 2002
10602002
Integrated genotype calling and association analysis of SNPs, common copy number polymorphisms and rare CNVs
JM Korn, FG Kuruvilla, SA McCarroll, A Wysoker, J Nemesh, S Cawley, ...
Nature genetics 40 (10), 1253-1260, 2008
9502008
Novel RNAs identified from an in-depth analysis of the transcriptome of human chromosomes 21 and 22
D Kampa, J Cheng, P Kapranov, M Yamanaka, S Brubaker, S Cawley, ...
Genome research 14 (3), 331-342, 2004
6692004
Genotyping over 100,000 SNPs on a pair of oligonucleotide arrays
H Matsuzaki, S Dong, H Loi, X Di, G Liu, E Hubbell, J Law, T Berntsen, ...
Nature Methods 1 (2), 109-111, 2004
5942004
Methods, systems, and computer readable media for nucleic acid sequencing
M Davey, S Cawley, A Williams
US Patent 10,241,075, 2019
2732019
Dynamic model based algorithms for screening and genotyping over 100K SNPs on oligonucleotide microarrays
X Di, H Matsuzaki, TA Webster, E Hubbell, G Liu, S Dong, D Bartell, ...
Bioinformatics 21 (9), 1958-1963, 2005
2622005
SLAM: cross-species gene finding and alignment with a generalized pair hidden Markov model
M Alexandersson, S Cawley, L Pachter
Genome research 13 (3), 496-502, 2003
2442003
Next generation genome-wide association tool: design and coverage of a high-throughput European-optimized SNP array
TJ Hoffmann, MN Kvale, SE Hesselson, Y Zhan, C Aquino, Y Cao, ...
Genomics 98 (2), 79-89, 2011
2342011
Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology
IW Deveson, B Gong, K Lai, JS LoCoco, TA Richmond, J Schageman, ...
Nature biotechnology, 1-14, 2021
1912021
Applications of generalized pair hidden Markov models to alignment and gene finding problems
L Pachter, M Alexandersson, S Cawley
Proceedings of the fifth annual international conference on Computational …, 2001
1472001
HMM sampling and applications to gene finding and alternative splicing
SL Cawley, L Pachter
Bioinformatics 19 (suppl_2), ii36-ii41, 2003
942003
Description of the data from the Collaborative Study on the Genetics of Alcoholism (COGA) and single-nucleotide polymorphism genotyping for Genetic Analysis Workshop 14
HJ Edenberg, LJ Bierut, P Boyce, M Cao, S Cawley, R Chiles, KF Doheny, ...
BMC genetics 6 (1), 1-8, 2005
892005
Multiple testing methods for ChIP–chip high density oligonucleotide array data
S Keleş, MJ Van Der Laan, S Dudoit, SE Cawley
Journal of Computational Biology 13 (3), 579-613, 2006
872006
Methods for genotyping polymorphisms in humans
G Liu, S Cawley, H Matsuzaki, EA Hubbell, G Yang, TA Webster, R Mei, ...
US Patent 7,361,468, 2008
862008
ANOSVA: a statistical method for detecting splice variation from expression data
MS Cline, J Blume, S Cawley, TA Clark, JS Hu, G Lu, N Salomonis, ...
Bioinformatics 21 (suppl_1), i107-i115, 2005
762005
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