Using text to build semantic networks for pharmacogenomics A Coulet, NH Shah, Y Garten, M Musen, RB Altman Journal of biomedical informatics 43 (6), 1009-1019, 2010 | 134 | 2010 |
NCBO Resource Index: Ontology-based search and mining of biomedical resources C Jonquet, P LePendu, S Falconer, A Coulet, NF Noy, MA Musen, ... Journal of Web Semantics 9 (3), 316-324, 2011 | 127 | 2011 |
Recent progress in automatically extracting information from the pharmacogenomic literature Y Garten, A Coulet, RB Altman Pharmacogenomics 11 (10), 1467-1489, 2010 | 103 | 2010 |
Atherosclerotic cardiovascular disease risk prediction in disaggregated Asian and Hispanic subgroups using electronic health records F Rodriguez, S Chung, MR Blum, A Coulet, S Basu, LP Palaniappan Journal of the American Heart Association 8 (14), e011874, 2019 | 81 | 2019 |
Creating fair models of atherosclerotic cardiovascular disease risk S Pfohl, B Marafino, A Coulet, F Rodriguez, L Palaniappan, NH Shah Proceedings of the 2019 AAAI/ACM Conference on AI, Ethics, and Society, 271-278, 2019 | 70 | 2019 |
Results of the ontology alignment evaluation initiative 2020 MAN Pour, A Algergawy, R Amini, D Faria, I Fundulaki, I Harrow, ... 15th International Workshop on Ontology Matching (OM 2020) 2788, 92-138, 2020 | 61 | 2020 |
Integration and publication of heterogeneous text-mined relationships on the Semantic Web A Coulet, Y Garten, M Dumontier, RB Altman, MA Musen, NH Shah Journal of biomedical semantics 2, 1-16, 2011 | 50 | 2011 |
BioPortal: Ontologies and Integrated Data Resources at the Click of the Mouse PL Whetzel, NH Shah, NF Noy, B Dai, M Dorf, N Griffith, C Jonquet, ... 1st International Conference on Biomedical Ontology (ICBO 2009), Poster …, 2009 | 45 | 2009 |
Method and system for extraction and normalization of relationships via ontology induction A Coulet, NH Shah, Y Garten, M Musen, RB Altman US Patent 10,025,774, 2018 | 44 | 2018 |
PGxO and PGxLOD: a reconciliation of pharmacogenomic knowledge of various provenances, enabling further comparison P Monnin, J Legrand, G Husson, P Ringot, A Tchechmedjiev, C Jonquet, ... BMC bioinformatics 20, 1-16, 2019 | 38 | 2019 |
Suggested ontology for pharmacogenomics (SO-Pharm): modular construction and preliminary testing A Coulet, M Smaïl-Tabbone, A Napoli, MD Devignes OTM Confederated International Conferences" On the Move to Meaningful …, 2006 | 36 | 2006 |
Ontology-guided data preparation for discovering genotype-phenotype relationships A Coulet, M Smaïl-Tabbone, P Benlian, A Napoli, MD Devignes BMC bioinformatics 9, 1-9, 2008 | 35 | 2008 |
PGxCorpus, a manually annotated corpus for pharmacogenomics J Legrand, R Gogdemir, C Bousquet, K Dalleau, MD Devignes, W Digan, ... Scientific data 7 (1), 3, 2020 | 27 | 2020 |
Using pattern structures for analyzing ontology-based annotations of biomedical data A Coulet, F Domenach, M Kaytoue, A Napoli International Conference on Formal Concept Analysis, 76-91, 2013 | 27 | 2013 |
Extracting disease-symptom relationships by learning syntactic patterns from dependency graphs M Hassan, O Makkaoui, A Coulet, Y Toussaint BioNLP 15, 184, 2015 | 21 | 2015 |
Semantically enabling pharmacogenomic data for the realization of personalized medicine M Samwald, A Coulet, I Huerga, RL Powers, JS Luciano, RR Freimuth, ... Pharmacogenomics 13 (2), 201-212, 2012 | 21 | 2012 |
Syntax-based transfer learning for the task of biomedical relation extraction J Legrand, Y Toussaint, C Raïssi, A Coulet Journal of Biomedical Semantics 12, 1-11, 2021 | 20 | 2021 |
SNP-Converter: An ontology-based solution to reconcile heterogeneous SNP descriptions for pharmacogenomic studies A Coulet, M Smaïl-Tabbone, P Benlian, A Napoli, MD Devignes International Workshop on Data Integration in the Life Sciences, 82-93, 2006 | 17 | 2006 |
Investigating ADR mechanisms with explainable AI: a feasibility study with knowledge graph mining E Bresso, P Monnin, C Bousquet, FÉ Calvier, NC Ndiaye, N Petitpain, ... BMC medical informatics and decision making 21 (1), 171, 2021 | 15 | 2021 |
Technical, ethical, legal, and societal challenges with digital twin systems for the management of chronic diseases in children and young people D Drummond, A Coulet Journal of Medical Internet Research 24 (10), e39698, 2022 | 14 | 2022 |