| Long-term genomic coevolution of host-parasite interaction in the natural environment E Laanto, V Hoikkala, J Ravantti, LR Sundberg Nature communications 8 (1), 111, 2017 | 108 | 2017 |
| Adapting a phage to combat phage resistance E Laanto, K Mäkelä, V Hoikkala, JJ Ravantti, LR Sundberg Antibiotics 9 (6), 291, 2020 | 42 | 2020 |
| Cooperation between different CRISPR-Cas types enables adaptation in an RNA-targeting system V Hoikkala, J Ravantti, C Díez-Villaseñor, M Tiirola, RA Conrad, ... MBio 12 (2), 10.1128/mbio. 03338-20, 2021 | 28 | 2021 |
| Evolutionary rescue of bacteria via horizontal gene transfer under a lethal β-lactam concentration V Ojala, S Mattila, V Hoikkala, JKH Bamford, M Jalasvuori Journal of global antimicrobial resistance 2 (3), 198-200, 2014 | 22 | 2014 |
| Chasing the origin of viruses: capsid-forming genes as a life-saving preadaptation within a community of early replicators M Jalasvuori, S Mattila, V Hoikkala PLoS One 10 (5), e0126094, 2015 | 21 | 2015 |
| Gliding Motility and Expression of Motility-Related Genes in Spreading and Non-spreading Colonies of Flavobacterium columnare R Penttinen, V Hoikkala, LR Sundberg Frontiers in Microbiology 9, 525, 2018 | 20 | 2018 |
| Bacteriophage resistance affects Flavobacterium columnare virulence partly via mutations in genes related to gliding motility and the type IX secretion system HMT Kunttu, A Runtuvuori-Salmela, K Sundell, T Wiklund, M Middelboe, ... Applied and Environmental Microbiology 87 (16), e00812-21, 2021 | 17 | 2021 |
| Mucin induces CRISPR-Cas defense in an opportunistic pathogen GM de Freitas Almeida, V Hoikkala, J Ravantti, N Rantanen, LR Sundberg Nature Communications 13 (1), 3653, 2022 | 15 | 2022 |
| Scoping the effectiveness and evolutionary obstacles in using plasmid-dependent phages to fight antibiotic resistance V Ojala, S Mattila, V Hoikkala, JKH Bamford, T Hiltunen, M Jalasvuori Future microbiology 11 (8), 999-1009, 2016 | 12 | 2016 |
| Antiviral type III CRISPR signalling via conjugation of ATP and SAM H Chi, V Hoikkala, S Grüschow, S Graham, S Shirran, MF White Nature 622 (7984), 826-833, 2023 | 11 | 2023 |
| Aquaculture as a source of empirical evidence for coevolution between CRISPR-Cas and phage V Hoikkala, GMF Almeida, E Laanto, LR Sundberg Philosophical Transactions of the Royal Society B 374 (1772), 20180100, 2019 | 8 | 2019 |
| Cooperation between CRISPR-Cas types enables adaptation in an RNA-targeting system V Hoikkala, J Ravantti, C Díez-Villaseñor, M Tiirola, RA Conrad, ... BioRxiv, 2020.02. 20.957498, 2020 | 7 | 2020 |
| Adapting a phage to combat phage resistance. Antibiotics 9: 291 E Laanto, K Mäkelä, V Hoikkala, JJ Ravantti, LR Sundberg | 5 | 2020 |
| Mucin induces CRISPR-Cas defence in an opportunistic pathogen GMF Almeida, V Hoikkala, J Ravantti, N Rantanen, LR Sundberg bioRxiv, 2021.08. 10.455787, 2021 | 2 | 2021 |
| Chromosomal Inversions and the Demography of Speciation in Drosophila montana and Drosophila flavomontana N Poikela, DR Laetsch, V Hoikkala, K Lohse, M Kankare Genome Biology and Evolution 16 (3), evae024, 2024 | 1 | 2024 |
| Antiviral Type III CRISPR signalling via conjugation of ATP and AdoMet H Chi, V Hoikkala, S Grüschow, S Graham, S Shirran, MF White bioRxiv, 2023.06. 26.546636, 2023 | 1 | 2023 |
| Speciation driven by ancestrally polymorphic chromosomal inversions N Poikela, DR Laetsch, K Lohse, M Kankare | 1 | 2022 |
| Bioinformatic analysis of type III CRISPR systems reveals key properties and new effector families V Hoikkala, S Graham, MF White Nucleic Acids Research, gkae462, 2024 | | 2024 |
| Multispecies coinfections and presence of antibiotics shape resistance and fitness costs in a pathogenic bacterium R Ashrafi, M Bruneaux, LR Sundberg, V Hoikkala, A Karvonen Molecular Ecology 32 (15), 4447-4460, 2023 | | 2023 |
| Dataset for Mucin induces CRISPR-Cas defense in an opportunistic pathogen LR Sundberg, N Rantanen, GMF Almeida, J Ravantti, V Hoikkala | | 2022 |
