Burden-driven feedback control of gene expression F Ceroni, A Boo, S Furini, TE Gorochowski, O Borkowski, YN Ladak, ... Nature Methods 15 (5), 387, 2018 | 354 | 2018 |
Synchronization and control of complex networks via contraction, adaptation and evolution P DeLellis, M Di Bernardo, TE Gorochowski, G Russo IEEE Circuits and Systems Magazine 10 (3), 64-82, 2010 | 155 | 2010 |
BSim: an agent-based tool for modeling bacterial populations in systems and synthetic biology TE Gorochowski, A Matyjaszkiewicz, T Todd, N Oak, K Kowalska, S Reid, ... PloS one 7 (8), e42790, 2012 | 144 | 2012 |
Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate TE Gorochowski, Z Ignatova, RAL Bovenberg, JA Roubos Nucleic Acids Research 43 (6), 3022-3032, 2015 | 135 | 2015 |
Pathways to cellular supremacy in biocomputing L Grozinger, M Amos, TE Gorochowski, P Carbonell, DA Oyarzún, R Stoof, ... Nature Communications 10 (1), 1-11, 2019 | 132 | 2019 |
A minimal model of ribosome allocation dynamics captures trade-offs in expression between endogenous and synthetic genes TE Gorochowski, I Avcilar-Kucukgoze, RAL Bovenberg, JA Roubos, ... ACS Synthetic Biology, 2016 | 120 | 2016 |
Agent-based modelling in synthetic biology TE Gorochowski Essays in Biochemistry 60 (4), 325-336, 2016 | 104 | 2016 |
Genetic circuit characterization and debugging using RNA‐seq TE Gorochowski, A Espah Borujeni, Y Park, AAK Nielsen, J Zhang, ... Molecular Systems Biology 13 (11), 952, 2017 | 98 | 2017 |
Towards the fully automated monitoring of ecological communities M Besson, J Alison, K Bjerge, TE Gorochowski, TT Høye, T Jucker, ... Ecology Letters 25 (12), 2753-2775, 2022 | 97 | 2022 |
Absolute quantification of translational regulation and burden using combined sequencing approaches TE Gorochowski, I Chelysheva, M Eriksen, P Nair, S Pedersen, Z Ignatova Molecular Systems Biology 15 (5), e8719, 2019 | 71 | 2019 |
Evolving enhanced topologies for the synchronization of dynamical complex networks TE Gorochowski, M di Bernardo, CS Grierson Physical Review E—Statistical, Nonlinear, and Soft Matter Physics 81 (5 …, 2010 | 70 | 2010 |
DNAplotlib: programmable visualization of genetic designs and associated data BS Der, E Glassey, BA Bartley, C Enghuus, DB Goodman, DB Gordon, ... ACS Synthetic Biology 6 (7), 1115-1119, 2016 | 61 | 2016 |
Organization of feed-forward loop motifs reveals architectural principles in natural and engineered networks TE Gorochowski, CS Grierson, M di Bernardo Science Advances 4 (3), eaap9751, 2018 | 59 | 2018 |
Precision design of stable genetic circuits carried in highly‐insulated E. coli genomic landing pads Y Park, A Espah Borujeni, TE Gorochowski, J Shin, CA Voigt Molecular Systems Biology 16 (8), e9584, 2020 | 55 | 2020 |
Towards an engineering theory of evolution SD Castle, CS Grierson, TE Gorochowski Nature Communications 12 (1), 3326, 2021 | 53 | 2021 |
Registry in a tube: multiplexed pools of retrievable parts for genetic design space exploration LBA Woodruff, TE Gorochowski, N Roehner, TS Mikkelsen, D Densmore, ... Nucleic Acids Research 45 (3), 1553-1565, 2016 | 53 | 2016 |
Memory and combinatorial logic based on DNA inversions: Dynamics and evolutionary stability J Fernandez-Rodriguez, L Yang, TE Gorochowski, DB Gordon, CA Voigt ACS Synthetic Biology 4 (12), 1361-1372, 2015 | 50 | 2015 |
Beyond contact-based transmission networks: the role of spatial coincidence TO Richardson, TE Gorochowski Journal of The Royal Society Interface 12 (111), 20150705, 2015 | 50 | 2015 |
The synthetic biology open language (SBOL) version 3: simplified data exchange for bioengineering JA McLaughlin, J Beal, G Mısırlı, R Grünberg, BA Bartley, J Scott-Brown, ... Frontiers in Bioengineering and Biotechnology 8, 1009, 2020 | 49 | 2020 |
Translational sensitivity of the Escherichia coli genome to fluctuating tRNA availability SE Wohlgemuth, TE Gorochowski, JA Roubos Nucleic Acids Research 41 (17), 8021-8033, 2013 | 49 | 2013 |