Type IV CRISPR-Cas systems are highly diverse and involved in competition between plasmids R Pinilla-Redondo, D Mayo-Muñoz, J Russel, RA Garrett, L Randau, ... Nucleic Acids Research 48 (4), 2000-2012, 2020 | 176 | 2020 |
CRISPRCasTyper: Automated Identification, Annotation, and Classification of CRISPR-Cas Loci J Russel, R Pinilla-Redondo, D Mayo-Muñoz, SA Shah, SJ Sørensen The CRISPR Journal 3 (6), 462-469, 2020 | 165 | 2020 |
Antagonism correlates with metabolic similarity in diverse bacteria J Russel, HL Røder, JS Madsen, M Burmølle, SJ Sørensen Proceedings of the National Academy of Sciences 114 (40), 10684-10688, 2017 | 150 | 2017 |
Coexistence facilitates interspecific biofilm formation in complex microbial communities JS Madsen, HL Røder, J Russel, H Sørensen, M Burmølle, SJ Sørensen Environmental microbiology 18 (8), 2565-2574, 2016 | 108 | 2016 |
The infant gut resistome associates with E. coli, environmental exposures, gut microbiome maturity, and asthma-associated bacterial composition X Li, J Stokholm, A Brejnrod, GA Vestergaard, J Russel, U Trivedi, ... Cell Host & Microbe, 2021 | 94 | 2021 |
Deciphering links between bacterial interactions and spatial organization in multispecies biofilms W Liu, S Jacquiod, A Brejnrod, J Russel, M Burmølle, SJ Sørensen The ISME journal 13 (12), 3054-3066, 2019 | 75 | 2019 |
Bacterial and protozoan dynamics upon thawing and freezing of an active layer permafrost soil M Schostag, A Priemé, S Jacquiod, J Russel, F Ekelund, CS Jacobsen The ISME journal 13 (5), 1345-1359, 2019 | 70 | 2019 |
CRISPR-Cas systems are widespread accessory elements across bacterial and archaeal plasmids R Pinilla-Redondo, J Russel, D Mayo-Muñoz, SA Shah, RA Garrett, ... Nucleic acids research 50 (8), 4315-4328, 2022 | 63 | 2022 |
Low‐abundant species facilitates specific spatial organization that promotes multispecies biofilm formation W Liu, J Russel, HL Røder, JS Madsen, M Burmølle, SJ Sørensen Environmental microbiology 19 (7), 2893-2905, 2017 | 60 | 2017 |
MicEco: Various functions for microbial community data J Russel R package version 0.9 15, 2021 | 57* | 2021 |
Environmental shaping of the bacterial and fungal community in infant bed dust and correlations with the airway microbiota S Gupta, MH Hjelmsø, J Lehtimäki, X Li, MS Mortensen, J Russel, ... Microbiome 8, 2020 | 44 | 2020 |
DAtest: a framework for choosing differential abundance or expression method J Russel, J Thorsen, AD Brejnrod, H Bisgaard, SJ Sørensen, M Burmølle bioRxiv, 241802, 2018 | 42 | 2018 |
Micro-scale intermixing: A requisite for stable and synergistic co-establishment in a four-species biofilm W Liu, J Russel, M Burmølle, SJ Sørensen, JS Madsen The ISME journal 12 (8), 1940-1951, 2018 | 39 | 2018 |
Enhanced bacterial mutualism through an evolved biofilm phenotype HL Røder, J Herschend, J Russel, MF Andersen, JS Madsen, ... The ISME journal 12 (11), 2608-2618, 2018 | 36 | 2018 |
Unexpected diversity among small-scale sample replicates of defined plant root compartments S Attia, J Russel, MS Mortensen, JS Madsen, SJ Sørensen The ISME journal 16 (4), 997-1003, 2022 | 33 | 2022 |
The developing airway and gut microbiota in early life is influenced by age of older siblings ED Christensen, MH Hjelmsø, J Thorsen, S Shah, T Redgwell, ... Microbiome 10 (1), 106, 2022 | 29 | 2022 |
Different degrees of niche differentiation for bacteria, fungi, and myxomycetes within an elevational transect in the German Alps M Borg Dahl, AD Brejnrod, J Russel, SJ Sørensen, M Schnittler Microbial ecology 78, 764-780, 2019 | 26 | 2019 |
Bacteriophages suppress CRISPR–Cas immunity using RNA-based anti-CRISPRs S Camara-Wilpert, D Mayo-Muñoz, J Russel, RD Fagerlund, JS Madsen, ... Nature 623 (7987), 601-607, 2023 | 19 | 2023 |
Biofilms can act as plasmid reserves in the absence of plasmid specific selection HL Røder, U Trivedi, J Russel, KN Kragh, J Herschend, I Thalsø-Madsen, ... npj Biofilms and Microbiomes 7 (1), 78, 2021 | 18 | 2021 |
Broad Dissemination of Plasmids across Groundwater-Fed Rapid Sand Filter Microbiomes R Pinilla-Redondo, AK Olesen, J Russel, LE de Vries, LD Christensen, ... mBio 12 (6), e03068-21, 2021 | 17* | 2021 |