| Dysfunctional CD8 T cells form a proliferative, dynamically regulated compartment within human melanoma H Li, AM van der Leun, I Yofe, Y Lubling, D Gelbard-Solodkin, ... Cell 176 (4), 775-789. e18, 2019 | 886 | 2019 |
| Cnidarian cell type diversity and regulation revealed by whole-organism single-cell RNA-Seq A Sebé-Pedrós, B Saudemont, E Chomsky, F Plessier, MP Mailhé, ... Cell 173 (6), 1520-1534. e20, 2018 | 311 | 2018 |
| MetaCell: analysis of single-cell RNA-seq data using K-nn graph partitions Y Baran, A Bercovich, A Sebe-Pedros, Y Lubling, A Giladi, E Chomsky, ... Genome biology 20, 1-19, 2019 | 270 | 2019 |
| Capturing pairwise and multi-way chromosomal conformations using chromosomal walks P Olivares-Chauvet, Z Mukamel, A Lifshitz, O Schwartzman, NO Elkayam, ... Nature 540 (7632), 296-300, 2016 | 143 | 2016 |
| A single-embryo, single-cell time-resolved model for mouse gastrulation M Mittnenzweig, Y Mayshar, S Cheng, R Ben-Yair, R Hadas, Y Rais, ... Cell 184 (11), 2825-2842. e22, 2021 | 138 | 2021 |
| The spatiotemporal program of zonal liver regeneration following acute injury S Ben-Moshe, T Veg, R Manco, S Dan, D Papinutti, A Lifshitz, ... Cell Stem Cell 29 (6), 973-989. e10, 2022 | 90 | 2022 |
| Single-cell analysis of clonal maintenance of transcriptional and epigenetic states in cancer cells Z Meir, Z Mukamel, E Chomsky, A Lifshitz, A Tanay Nature genetics 52 (7), 709-718, 2020 | 78 | 2020 |
| Dysfunctional CD8 T cells form a proliferative, dynamically regulated compartment within human melanoma H Li, AM van der Leun, I Yofe, Y Lubling, D Gelbard-Solodkin, ... Cell 181 (3), 747, 2020 | 63 | 2020 |
| DNA methylation landscapes of 1538 breast cancers reveal a replication-linked clock, epigenomic instability and cis-regulation RN Batra, A Lifshitz, AT Vidakovic, SF Chin, A Sati-Batra, SJ Sammut, ... Nature communications 12 (1), 5406, 2021 | 48 | 2021 |
| Metacell-2: a divide-and-conquer metacell algorithm for scalable scRNA-seq analysis O Ben-Kiki, A Bercovich, A Lifshitz, A Tanay Genome biology 23 (1), 100, 2022 | 33 | 2022 |
| Global DNA methylation reflects spatial heterogeneity and molecular evolution of lung adenocarcinomas S Dietz, A Lifshitz, D Kazdal, A Harms, V Endris, H Winter, A Stenzinger, ... International journal of cancer 144 (5), 1061-1072, 2019 | 26 | 2019 |
| Personalized lab test models to quantify disease potentials in healthy individuals NM Cohen, O Schwartzman, R Jaschek, A Lifshitz, M Hoichman, R Balicer, ... Nature medicine 27 (9), 1582-1591, 2021 | 23 | 2021 |
| The intrinsic and extrinsic effects of TET proteins during gastrulation S Cheng, M Mittnenzweig, Y Mayshar, A Lifshitz, M Dunjić, Y Rais, ... Cell 185 (17), 3169-3185. e20, 2022 | 22 | 2022 |
| SHAMAN: bin-free randomization, normalization and screening of Hi-C matrices N Mendelson Cohen, P Olivares-Chauvet, Y Lubling, Y Baran, A Lifshitz, ... BioRxiv, 187203, 2017 | 13 | 2017 |
| Combgap Promotes Ovarian Niche Development and Chromatin Association of EcR-Binding Regions in BR-C A Hitrik, M Popliker, D Gancz, Z Mukamel, A Lifshitz, O Schwartzman, ... PLoS Genetics 12 (11), e1006330, 2016 | 13 | 2016 |
| Single cell analysis reveals dynamics of transposable element transcription following epigenetic de-repression D Brocks, E Chomsky, Z Mukamel, A Lifshitz, A Tanay BioRxiv, 462853, 2018 | 12 | 2018 |
| Time-aligned hourglass gastrulation models in rabbit and mouse Y Mayshar, O Raz, S Cheng, R Ben-Yair, R Hadas, N Reines, ... Cell 186 (12), 2610-2627. e18, 2023 | 10 | 2023 |
| Longitudinal machine learning uncouples healthy aging factors from chronic disease risks NM Cohen, A Lifshitz, R Jaschek, E Rinott, R Balicer, LI Shlush, ... Nature Aging 4 (1), 129-144, 2024 | 4 | 2024 |
| DNA methyltransferases 3A and 3B target specific sequences during mouse gastrulation Z Mukamel, A Lifshitz, M Mittnenzweig, E Chomsky, O Schwartzman, ... Nature structural & molecular biology 29 (12), 1252-1265, 2022 | 4 | 2022 |
| Modeling T cell temporal response to cancer immunotherapy rationalizes development of combinatorial treatment protocols O Barboy, A Bercovich, H Li, Y Eyal-Lubling, A Yalin, Y Shapir Itai, ... Nature Cancer, 1-18, 2024 | 3 | 2024 |
