Lnc2Cancer 3.0: an updated resource for experimentally supported lncRNA/circRNA cancer associations and web tools based on RNA-seq and scRNA-seq data Y Gao, S Shang, S Guo, X Li, H Zhou, H Liu, Y Sun, J Wang, P Wang, ... Nucleic acids research 49 (D1), D1251-D1258, 2021 | 190 | 2021 |
Lnc2Cancer v2. 0: updated database of experimentally supported long non-coding RNAs in human cancers Y Gao, P Wang, Y Wang, X Ma, H Zhi, D Zhou, X Li, Y Fang, W Shen, Y Xu, ... Nucleic acids research 47 (D1), D1028-D1033, 2019 | 166 | 2019 |
LncACTdb 2.0: an updated database of experimentally supported ceRNA interactions curated from low-and high-throughput experiments P Wang, X Li, Y Gao, Q Guo, Y Wang, Y Fang, X Ma, H Zhi, D Zhou, ... Nucleic acids research 47 (D1), D121-D127, 2019 | 98 | 2019 |
LnCeVar: a comprehensive database of genomic variations that disturb ceRNA network regulation P Wang, X Li, Y Gao, Q Guo, S Ning, Y Zhang, S Shang, J Wang, Y Wang, ... Nucleic acids research 48 (D1), D111-D117, 2020 | 57 | 2020 |
MSDD: a manually curated database of experimentally supported associations among miRNAs, SNPs and human diseases M Yue, D Zhou, H Zhi, P Wang, Y Zhang, Y Gao, M Guo, X Li, Y Wang, ... Nucleic acids research 46 (D1), D181-D185, 2018 | 52 | 2018 |
LnCeCell: a comprehensive database of predicted lncRNA-associated ceRNA networks at single-cell resolution P Wang, Q Guo, Y Hao, Q Liu, Y Gao, H Zhi, X Li, S Shang, S Guo, ... Nucleic Acids Research 49 (D1), D125-D133, 2021 | 46 | 2021 |
Lnc2Meth: a manually curated database of regulatory relationships between long non-coding RNAs and DNA methylation associated with human disease H Zhi, X Li, P Wang, Y Gao, B Gao, D Zhou, Y Zhang, M Guo, M Yue, ... Nucleic Acids Research 46 (D1), D133-D138, 2018 | 44 | 2018 |
Comprehensive characterization of somatic mutations impacting lncRNA expression for pan-cancer Y Gao, X Li, H Zhi, Y Zhang, P Wang, Y Wang, S Shang, Y Fang, W Shen, ... Molecular Therapy-Nucleic Acids 18, 66-79, 2019 | 31 | 2019 |
LincSNP 3.0: an updated database for linking functional variants to human long non-coding RNAs, circular RNAs and their regulatory elements Y Gao, X Li, S Shang, S Guo, P Wang, D Sun, J Gan, J Sun, Y Zhang, ... Nucleic Acids Research 49 (D1), D1244-D1250, 2021 | 30 | 2021 |
Inferences of individual drug responses across diverse cancer types using a novel competing endogenous RNA network Y Zhang, X Li, D Zhou, H Zhi, P Wang, Y Gao, M Guo, M Yue, Y Wang, ... Molecular oncology 12 (9), 1429-1446, 2018 | 26 | 2018 |
Dynamic TF-lncRNA regulatory networks revealed prognostic signatures in the development of ovarian cancer Q Guo, J Wang, Y Gao, X Li, Y Hao, S Ning, P Wang Frontiers in bioengineering and biotechnology 8, 460, 2020 | 19 | 2020 |
Signatures of EMT, immunosuppression, and inflammation in primary and recurrent human cutaneous squamous cell carcinoma at single-cell resolution XC Xin Li, Shuang Zhao, Xiaohui Bian, Lining Zhang, Lixia Lu, Shiyao Pei ... Theranostics 12 (17), 7352-7349, 2022 | 16* | 2022 |
CancerClock: A DNA methylation age predictor to identify and characterize aging clock in pan-cancer T Zhu, Y Gao, J Wang, X Li, S Shang, Y Wang, S Guo, H Zhou, H Liu, ... Frontiers in bioengineering and biotechnology 7, 388, 2019 | 15 | 2019 |
Epigenome signature as an immunophenotype indicator prompts durable clinical immunotherapy benefits in lung adenocarcinoma X Pan, C Zhang, J Wang, P Wang, Y Gao, S Shang, S Guo, X Li, H Zhi, ... Briefings in Bioinformatics 23 (1), bbab481, 2022 | 12 | 2022 |
MeImmS: predict clinical benefit of Anti-PD-1/PD-L1 treatments based on DNA methylation in non-small cell lung cancer S Shang, X Li, Y Gao, S Guo, D Sun, H Zhou, Y Sun, P Wang, H Zhi, J Bai, ... Frontiers in genetics 12, 676449, 2021 | 10 | 2021 |
Comprehensive characterization genetic regulation and chromatin landscape of enhancer-associated long non-coding RNAs and their implication in human cancer X Li, X Pan, H Zhou, P Wang, Y Gao, S Shang, S Guo, J Sun, Z Xiong, ... Briefings in Bioinformatics 23 (1), bbab401, 2022 | 9 | 2022 |
BRD4 inhibitor suppresses melanoma metastasis via the SPINK6/EGFR-EphA2 pathway R Hu, Y Li, Y Guo, X Li, S Du, M Liao, H Hou, H Sun, S Zhao, J Su, ... Pharmacological Research 187, 106609, 2023 | 8 | 2023 |
Enhancer methylation dynamics drive core transcriptional regulatory circuitry in pan-cancer X Pan, X Li, J Sun, Z Xiong, H Hu, S Ning, H Zhi Oncogene, 1-11, 2022 | 6 | 2022 |
Inferring SARS-CoV-2 functional genomics from viral transcriptome with identification of potential antiviral drugs and therapeutic targets X Pan, X Li, S Ning, H Zhi Cell & bioscience 11 (1), 1-7, 2021 | 5 | 2021 |
Graph deep learning enabled spatial domains identification for spatial transcriptomics T Liu, ZY Fang, X Li, LN Zhang, DS Cao, MZ Yin Briefings in Bioinformatics 24 (3), bbad146, 2023 | 4 | 2023 |