Ecological plant epigenetics: Evidence from model and non‐model species, and the way forward CL Richards, C Alonso, C Becker, O Bossdorf, E Bucher, ... Ecology letters 20 (12), 1576-1590, 2017 | 303 | 2017 |
Genomic organization of eukaryotic tRNAs C Bermudez-Santana, CSO Attolini, T Kirsten, J Engelhardt, SJ Prohaska, ... BMC genomics 11, 1-14, 2010 | 100 | 2010 |
Recent advances in RNA folding J Fallmann, S Will, J Engelhardt, B Grüning, R Backofen, PF Stadler Journal of biotechnology 261, 97-104, 2017 | 89 | 2017 |
The helicase aquarius/EMB-4 is required to overcome intronic barriers to allow nuclear RNAi pathways to heritably silence transcription A Akay, T Di Domenico, KM Suen, A Nabih, GE Parada, M Larance, ... Developmental cell 42 (3), 241-255. e6, 2017 | 69 | 2017 |
RNA-bioinformatics: tools, services and databases for the analysis of RNA-based regulation R Backofen, J Engelhardt, A Erxleben, J Fallmann, B Grüning, U Ohler, ... Journal of biotechnology 261, 76-84, 2017 | 27 | 2017 |
A novel method to analyze 5-hydroxymethylcytosine in CpG sequences using maintenance DNA methyltransferase, DNMT1 S Takahashi, I Suetake, J Engelhardt, S Tajima FEBS open bio 5, 741-747, 2015 | 24 | 2015 |
LocARNAscan: Incorporating thermodynamic stability in sequence and structure-based RNA homology search S Will, MF Siebauer, S Heyne, J Engelhardt, PF Stadler, K Reiche, ... Algorithms for Molecular Biology 8, 1-11, 2013 | 20 | 2013 |
Evolution of the unspliced transcriptome J Engelhardt, PF Stadler BMC evolutionary biology 15, 1-13, 2015 | 13 | 2015 |
Protein-coding structured RNAs: A computational survey of conserved RNA secondary structures overlapping coding regions in drosophilids S Findeiß, J Engelhardt, SJ Prohaska, PF Stadler Biochimie 93 (11), 2019-2023, 2011 | 13 | 2011 |
Evolution of DNA methylation across ecdysozoa J Engelhardt, O Scheer, PF Stadler, SJ Prohaska Journal of molecular evolution 90 (1), 56-72, 2022 | 11 | 2022 |
MEIOZORES 2019-exploring the marine meiofauna of the Azores K Jörger, JL Norenburg Açoreana, 2021 | 9 | 2021 |
The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars J Salojärvi, A Rambani, Z Yu, R Guyot, S Strickler, M Lepelley, C Wang, ... Nature genetics 56 (4), 721-731, 2024 | 8 | 2024 |
Hidden treasures in unspliced EST data J Engelhardt, PF Stadler Theory in Biosciences 131, 49-57, 2012 | 8 | 2012 |
Gogol CL Richards, C Alonso, C Becker, O Bossdorf, E Bucher, ... Döring, A., Grosse, I., Van Gurp, TP, Heer, K., Kronholm, I., Lampei, C …, 0 | 6 | |
Introducing evolutionary biologists to the analysis of big data: guidelines to organize extended bioinformatics training courses R Faria, D Triant, A Perdomo-Sabogal, B Overduin, C Bleidorn, ... Evolution: Education and Outreach 11 (1), 1-10, 2018 | 4 | 2018 |
Evolution of 3'UTR-associated RNAs J Engelhardt, PF Stadler BMC Bioinformatics 16 (Suppl 8), A7, 2015 | 3 | 2015 |
Exposure to 3, 3′, 4, 4′, 5-Pentachlorobiphenyl (PCB126) Causes Widespread DNA Hypomethylation in Adult Zebrafish Testis N Aluru, J Engelhardt Toxicological Sciences 188 (1), 75-87, 2022 | 1 | 2022 |