| Representing and querying disease networks using graph databases A Lysenko, IA Roznovăţ, M Saqi, A Mazein, CJ Rawlings, C Auffray BioData mining 9, 1-19, 2016 | 109 | 2016 |
| Systems medicine disease maps: community-driven comprehensive representation of disease mechanisms A Mazein, M Ostaszewski, I Kuperstein, S Watterson, N Le Novère, ... NPJ systems biology and applications 4 (1), 21, 2018 | 94 | 2018 |
| Systems biology graphical notation: process description language level 1 version 2.0 A Rougny, V Touré, S Moodie, I Balaur, T Czauderna, H Borlinghaus, ... Journal of integrative bioinformatics 16 (2), 20190022, 2019 | 55 | 2019 |
| Systems medicine: the future of medical genomics, healthcare, and wellness M Saqi, J Pellet, I Roznovat, A Mazein, S Ballereau, B De Meulder, ... Systems Medicine, 43-60, 2016 | 52 | 2016 |
| A computational framework for complex disease stratification from multiple large-scale datasets B De Meulder, D Lefaudeux, AT Bansal, A Mazein, A Chaiboonchoe, ... BMC systems biology 12, 1-23, 2018 | 41 | 2018 |
| Introducing PIONEER: a project to harness big data in prostate cancer research MI Omar, MJ Roobol, MJ Ribal, T Abbott, PM Agapow, S Araujo, ... Nature Reviews Urology 17 (6), 351-362, 2020 | 37* | 2020 |
| Recon2Neo4j: applying graph database technologies for managing comprehensive genome-scale networks I Balaur, A Mazein, M Saqi, A Lysenko, CJ Rawlings, C Auffray Bioinformatics 33 (7), 1096-1098, 2017 | 36 | 2017 |
| EpiGeNet: a graph database of interdependencies between genetic and epigenetic events in colorectal cancer I Balaur, M Saqi, A Barat, A Lysenko, A Mazein, CJ Rawlings, HJ Ruskin, ... Journal of Computational Biology 24 (10), 969-980, 2017 | 24 | 2017 |
| STON: exploring biological pathways using the SBGN standard and graph databases V Touré, A Mazein, D Waltemath, I Balaur, M Saqi, R Henkel, J Pellet, ... BMC bioinformatics 17, 1-9, 2016 | 22 | 2016 |
| Human-like layout algorithms for signalling hypergraphs: outlining requirements M Siebenhaller, SS Nielsen, F McGee, I Balaur, C Auffray, A Mazein Briefings in bioinformatics 21 (1), 62-72, 2020 | 12 | 2020 |
| AsthmaMap: An interactive knowledge repository for mechanisms of asthma A Mazein, O Ivanova, I Balaur, M Ostaszewski, V Berzhitskaya, ... Journal of Allergy and Clinical Immunology 147 (3), 853-856, 2021 | 11 | 2021 |
| A computational model for genetic and epigenetic signals in colon cancer IA Roznovăţ, HJ Ruskin Interdisciplinary Sciences: Computational Life Sciences 5, 175-186, 2013 | 10 | 2013 |
| How well do polygenic risk scores identify men at high risk for prostate cancer? Systematic review and meta-analysis A Siltari, R Lönnerbro, K Pang, K Shiranov, A Asiimwe, S Evans-Axelsson, ... Clinical genitourinary cancer 21 (2), 316. e1-316. e11, 2023 | 8 | 2023 |
| cd2sbgnml: bidirectional conversion between CellDesigner and SBGN formats I Balaur, L Roy, A Mazein, SG Karaca, U Dogrusoz, E Barillot, A Zinovyev Bioinformatics 36 (8), 2620-2622, 2020 | 8 | 2020 |
| CyFi-MAP: an interactive pathway-based resource for cystic fibrosis C Pereira, A Mazein, CM Farinha, MA Gray, K Kunzelmann, ... Scientific reports 11 (1), 22223, 2021 | 7 | 2021 |
| The key role of patient involvement in the development of core outcome sets in prostate cancer K Beyer, SJ MacLennan, L Moris, M Lardas, K Mastris, G Hooker, ... European Urology Focus 7 (5), 943-946, 2021 | 7 | 2021 |
| A guide for developing comprehensive systems biology maps of disease mechanisms: planning, construction and maintenance A Mazein, ML Acencio, I Balaur, A Rougny, D Welter, A Niarakis, ... Frontiers in bioinformatics 3, 1197310, 2023 | 4 | 2023 |
| ISMB/ECCB 2017 proceedings N Beerenwinkel, Y Bromberg Bioinformatics 33 (14), i1-i2, 2017 | 4 | 2017 |
| StonPy: a tool to parse and query collections of SBGN maps in a graph database A Rougny, I Balaur, A Luna, A Mazein Bioinformatics 39 (3), btad100, 2023 | 3 | 2023 |
| Drug-target identification in COVID-19 disease mechanisms using computational systems biology approaches A Niarakis, M Ostaszewski, A Mazein, I Kuperstein, M Kutmon, ... Frontiers in Immunology 14, 1282859, 2024 | 2 | 2024 |
