Fibroblast heterogeneity and immunosuppressive environment in human breast cancer A Costa, Y Kieffer, A Scholer-Dahirel, F Pelon, B Bourachot, M Cardon, ... Cancer cell 33 (3), 463-479. e10, 2018 | 1310 | 2018 |
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v. 3.0 L Heirendt, S Arreckx, T Pfau, SN Mendoza, A Richelle, A Heinken, ... Nature protocols 14 (3), 639-702, 2019 | 1033 | 2019 |
Principal manifolds for data visualization and dimension reduction, Lecture notes in computational science & engineering, Vol 58 AN Gorban, B Kgl, DC Wunsch, A Zinovyev Lecture notes in computational science & engineering, 2008 | 672* | 2008 |
Single-cell analysis reveals fibroblast clusters linked to immunotherapy resistance in cancer Y Kieffer, HR Hocine, G Gentric, F Pelon, C Bernard, B Bourachot, ... Cancer discovery 10 (9), 1330-1351, 2020 | 499 | 2020 |
Codon adaptation index as a measure of dominating codon bias A Carbone, A Zinovyev, F Képes Bioinformatics 19 (16), 2005-2015, 2003 | 414 | 2003 |
Vizualizatsiya mnogomernykh dannykh (Visualization of Multidimensional Data) A Zinovyev Krasnoyarsk State Technical University, Krasnoyarsk, 2000 | 346* | 2000 |
Classification of microarray data using gene networks F Rapaport, A Zinovyev, M Dutreix, E Barillot, JP Vert BMC bioinformatics 8, 1-15, 2007 | 335 | 2007 |
The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease A Noronha, J Modamio, Y Jarosz, N Sompairac, GP Gonzalez, ... Nucleic Acids Reseach, 2018 | 321 | 2018 |
Control-free calling of copy number alterations in deep-sequencing data using GC-content normalization V Boeva, A Zinovyev, K Bleakley, JP Vert, I Janoueix-Lerosey, O Delattre, ... Bioinformatics 27 (2), 268-269, 2011 | 310 | 2011 |
Single-cell trajectories reconstruction, exploration and mapping of omics data with STREAM H Chen, L Albergante, JY Hsu, CA Lareau, G Lo Bosco, J Guan, S Zhou, ... Nature communications 10 (1), 1-14, 2019 | 239 | 2019 |
Mathematical modelling of cell-fate decision in response to death receptor engagement L Calzone, L Tournier, S Fourquet, D Thieffry, B Zhivotovsky, E Barillot, ... PLoS computational biology 6 (3), e1000702, 2010 | 232 | 2010 |
The oncogenic EWS-FLI1 protein binds in vivo GGAA microsatellite sequences with potential transcriptional activation function N Guillon, F Tirode, V Boeva, A Zynovyev, E Barillot, O Delattre PloS one 4 (3), e4932, 2009 | 214 | 2009 |
Independent component analysis uncovers the landscape of the bladder tumor transcriptome and reveals insights into luminal and basal subtypes A Biton, I Bernard-Pierrot, Y Lou, C Krucker, E Chapeaublanc, ... Cell reports 9 (4), 1235-1245, 2014 | 212 | 2014 |
Constructive methods of invariant manifolds for kinetic problems AN Gorban, IV Karlin, AY Zinovyev Physics Reports 396 (4), 197-403, 2004 | 197 | 2004 |
Kinetic signatures of microRNA modes of action N Morozova, A Zinovyev, N Nonne, LL Pritchard, AN Gorban, ... RNA 18 (9), 032284, 2012 | 186 | 2012 |
Principal graphs and manifolds AN Gorban, AY Zinovyev Handbook of Research on Machine Learning Applications and Trends: Algorithms …, 2009 | 184* | 2009 |
Principal manifolds and graphs in practice: from molecular biology to dynamical systems AN Gorban, A Zinovyev International Journal of Neural Systems 20 (3), 219-232, 2010 | 183 | 2010 |
Computational systems biology of cancer E Barillot, L Calzone, P Hupe, JP Vert, A Zinovyev Chapman & Hall, CRC Mathematical & Computational B 47, 461, 2012 | 161 | 2012 |
A comprehensive modular map of molecular interactions in RB/E2F pathway L Calzone, A Gelay, A Zinovyev, F Radvanyi, E Barillot Molecular systems biology 4 (1), 0174, 2008 | 157 | 2008 |
Atlas of Cancer Signalling Network: a systems biology resource for integrative analysis of cancer data with Google Maps I Kuperstein, E Bonnet, HA Nguyen, D Cohen, E Viara, L Grieco, ... Oncogenesis 4 (7), e160-e160, 2015 | 147 | 2015 |