Clustering gene expression patterns A Ben-Dor, Z Yakhini Proceedings of the third annual international conference on Computational …, 1999 | 1831 | 1999 |
Wisdom of crowds for robust gene network inference D Marbach, JC Costello, R Küffner, NM Vega, RJ Prill, DM Camacho, ... Nature methods 9 (8), 796-804, 2012 | 1791 | 2012 |
Modelling and analysis of gene regulatory networks G Karlebach, R Shamir Nature reviews Molecular cell biology 9 (10), 770-780, 2008 | 1482 | 2008 |
Network‐based prediction of protein function R Sharan, I Ulitsky, R Shamir Molecular systems biology 3 (1), 88, 2007 | 1293 | 2007 |
Discovering statistically significant biclusters in gene expression data A Tanay, R Sharan, R Shamir Bioinformatics 18 (suppl_1), S136-S144, 2002 | 1209 | 2002 |
Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture LC Laurent, I Ulitsky, I Slavin, H Tran, A Schork, R Morey, C Lynch, ... Cell stem cell 8 (1), 106-118, 2011 | 1029 | 2011 |
Quantification of protein half-lives in the budding yeast proteome A Belle, A Tanay, L Bitincka, R Shamir, EK O’Shea Proceedings of the National Academy of Sciences 103 (35), 13004-13009, 2006 | 836 | 2006 |
A clustering algorithm based on graph connectivity E Hartuv, R Shamir Information processing letters 76 (4-6), 175-181, 2000 | 711 | 2000 |
CLICK: a clustering algorithm with applications to gene expression analysis R Sharan, R Shamir Proc Int Conf Intell Syst Mol Biol 8 (307), 16, 2000 | 697 | 2000 |
Revealing modularity and organization in the yeast molecular network by integrated analysis of highly heterogeneous genomewide data A Tanay, R Sharan, M Kupiec, R Shamir Proceedings of the National Academy of Sciences 101 (9), 2981-2986, 2004 | 507 | 2004 |
CLICK and EXPANDER: a system for clustering and visualizing gene expression data R Sharan, A Maron-Katz, R Shamir Bioinformatics 19 (14), 1787-1799, 2003 | 454 | 2003 |
Multi-omic and multi-view clustering algorithms: review and cancer benchmark N Rappoport, R Shamir Nucleic acids research 46 (20), 10546-10562, 2018 | 426 | 2018 |
Faster and simpler algorithm for sorting signed permutations by reversals H Kaplan, R Shamir, RE Tarjan Proceedings of the first annual international conference on Computational …, 1997 | 420 | 1997 |
Evaluation of methods for modeling transcription factor sequence specificity MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ... Nature biotechnology 31 (2), 126-134, 2013 | 404 | 2013 |
Regulatory networks define phenotypic classes of human stem cell lines FJ Müller, LC Laurent, D Kostka, I Ulitsky, R Williams, C Lu, IH Park, ... Nature 455 (7211), 401-405, 2008 | 398 | 2008 |
Cluster graph modification problems R Shamir, R Sharan, D Tsur Discrete Applied Mathematics 144 (1-2), 173-182, 2004 | 391 | 2004 |
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells R Elkon, C Linhart, R Sharan, R Shamir, Y Shiloh Genome research 13 (5), 773-780, 2003 | 388 | 2003 |
A fast algorithm for joint reconstruction of ancestral amino acid sequences T Pupko, I Pe, R Shamir, D Graur Molecular biology and evolution 17 (6), 890-896, 2000 | 385 | 2000 |
A global view of pleiotropy and phenotypically derived gene function in yeast AM Dudley, DM Janse, A Tanay, R Shamir, GMD Church Molecular systems biology 1 (1), 2005.0001, 2005 | 384 | 2005 |
EXPANDER – an integrative program suite for microarray data analysis R Shamir, A Maron-Katz, A Tanay, C Linhart, I Steinfeld, R Sharan, ... BMC bioinformatics 6, 1-12, 2005 | 370 | 2005 |